RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NOLC1Q14978 699 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCDC40-207ENST00000572253 VPS53Q5VIR6 699 aa12.87□□□□□ -0.35
CCDC40-207ENST00000572253 RASEFQ8IZ41 740 aa12.87□□□□□ -0.35
CCDC40-207ENST00000572253 VPS37CA5D8V6 355 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-207ENST00000572253 GJB2P29033 226 aa12.87□□□□□ -0.35
CCDC40-207ENST00000572253 KDM4AO75164 1064 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 NUTM2GQ5VZR2 741 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 TUBGCP6Q96RT7 1819 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 PI4KAP2A4QPH2 592 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 HIP1O00291 1037 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 PI4KAP1Q8N8J0 262 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 ABTB2Q8N961 1025 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 LARP6Q9BRS8 491 aaKnown RBP12.86□□□□□ -0.35
CCDC40-207ENST00000572253 TM6SF1Q9BZW5 370 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 ECHDC1Q9NTX5 307 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 CCDC192P0DO97 292 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 TEFQ10587 303 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 CHAF1AQ13111 956 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-207ENST00000572253 PRPF40BQ6NWY9 871 aaKnown RBP12.86□□□□□ -0.35
CCDC40-207ENST00000572253 MPNDQ8N594 471 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 MYRIPQ8NFW9 859 aa12.86□□□□□ -0.35
CCDC40-207ENST00000572253 C9orf78Q9NZ63 289 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-207ENST00000572253 NBPF7P0C2Y1 421 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-207ENST00000572253 LRRC37A3O60309 1634 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 ZBTB7CA1YPR0 619 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 CHPF2Q9P2E5 772 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 USP42Q9H9J4 1324 aaKnown RBP12.85□□□□□ -0.35
CCDC40-207ENST00000572253 PDCP20941 246 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 PSMA5P28066 241 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 BEND3Q5T5X7 828 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 HYPKQ9NX55 129 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 TBX22Q9Y458 520 aa12.85□□□□□ -0.35
CCDC40-207ENST00000572253 EVI5LQ96CN4 794 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 ZNF830Q96NB3 372 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-207ENST00000572253 GOLGA6L4A6NEF3 574 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 GIMAP6Q6P9H5 292 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 DNAJC5Q9H3Z4 198 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 TTC12Q9H892 705 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-207ENST00000572253 UBR1Q8IWV7 1749 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 EIF4A1P60842 406 aaKnown RBP12.84□□□□□ -0.35
CCDC40-207ENST00000572253 KRT85P78386 507 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 DNM1Q05193 864 aaKnown RBP12.84□□□□□ -0.35
CCDC40-207ENST00000572253 MTMR6Q9Y217 621 aa12.84□□□□□ -0.35
CCDC40-207ENST00000572253 RNF20Q5VTR2 975 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 PLPPR3Q6T4P5 718 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 USHBP1Q8N6Y0 703 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 ALDH1L1O75891 902 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 CPA1P15085 419 aa12.83□□□□□ -0.36
CCDC40-207ENST00000572253 LARP1BQ659C4 914 aaKnown RBP12.83□□□□□ -0.36
CCDC40-207ENST00000572253 ANKRD1Q15327 319 aa12.82□□□□□ -0.36
CCDC40-207ENST00000572253 DBF4Q9UBU7 674 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-207ENST00000572253 CCDC171Q6TFL3 1326 aa12.82□□□□□ -0.36
CCDC40-207ENST00000572253 N4BP2Q86UW6 1770 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-207ENST00000572253 PTH1RQ03431 593 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 MTX1Q13505 466 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 AACSQ86V21 672 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 ANKARQ7Z5J8 1434 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 BTBD11A6QL63 1104 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 LARGE1O95461 756 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 G3BP1Q13283 466 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC40-207ENST00000572253 MAP3K11Q16584 847 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 NUP62CLQ9H1M0 184 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 DIP2AQ14689 1571 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 TCHHQ07283 1943 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 ARID3AQ99856 593 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 KIF3AQ9Y496 699 aa12.81□□□□□ -0.36
CCDC40-207ENST00000572253 RBM8AQ9Y5S9 174 aaKnown RBP12.81□□□□□ -0.36
CCDC40-207ENST00000572253 PLEKHO1Q53GL0 409 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-207ENST00000572253 ZNF530Q6P9A1 599 aaPredicted RBP12.8□□□□□ -0.36
CCDC40-207ENST00000572253 SPTLC3Q9NUV7 552 aa12.8□□□□□ -0.36
CCDC40-207ENST00000572253 CEMIPQ8WUJ3 1361 aa12.8□□□□□ -0.36
CCDC40-207ENST00000572253 CREB3L3Q68CJ9 461 aa12.8□□□□□ -0.36
CCDC40-207ENST00000572253 BLOC1S2Q6QNY1 142 aa12.8□□□□□ -0.36
CCDC40-207ENST00000572253 ADCK5Q3MIX3 580 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 FAM200AQ8TCP9 573 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 KCNB2Q92953 911 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 ME3Q16798 604 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 C1orf141Q5JVX7 400 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 FUCA2Q9BTY2 467 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 SCAND2PQ9GZW5 306 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-207ENST00000572253 MAP3K2Q9Y2U5 619 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 DDX58O95786 925 aaKnown RBP12.79□□□□□ -0.36
CCDC40-207ENST00000572253 ANXA1P04083 346 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 NECAB1Q8N987 351 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 IP6K1Q92551 441 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 CCDC94Q9BW85 323 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-207ENST00000572253 PIK3C2AO00443 1686 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 KSR2Q6VAB6 950 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 LGR6Q9HBX8 967 aa12.79□□□□□ -0.36
CCDC40-207ENST00000572253 NECTIN1Q15223 517 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 AKAP4Q5JQC9 854 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 SPC24Q8NBT2 197 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 DRC7Q8IY82 874 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 TNMDQ9H2S6 317 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 CHMP3Q9Y3E7 222 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 ELP1O95163 1332 aa12.78□□□□□ -0.36
CCDC40-207ENST00000572253 SMAP1Q8IYB5 467 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-207ENST00000572253 PA2G4Q9UQ80 394 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms