RNA–Protein interactions for RNA: ENST00000571186.5

CIITA-205, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 1,041 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-205ENST00000571186 PIP4K2AP48426 406 aaPredicted RBP19.17■□□□□ 0.66
CIITA-205ENST00000571186 STYK1Q6J9G0 422 aa19.17■□□□□ 0.66
CIITA-205ENST00000571186 PHACTR3Q96KR7 559 aa19.17■□□□□ 0.66
CIITA-205ENST00000571186 DDNO94850 711 aaPredicted RBP19.16■□□□□ 0.66
CIITA-205ENST00000571186 SRGNP10124 158 aa19.16■□□□□ 0.66
CIITA-205ENST00000571186 PRKAR2BP31323 418 aa19.16■□□□□ 0.66
CIITA-205ENST00000571186 PRPF40BQ6NWY9 871 aaKnown RBP19.16■□□□□ 0.66
CIITA-205ENST00000571186 MASTLQ96GX5 879 aa19.16■□□□□ 0.66
CIITA-205ENST00000571186 USP16Q9Y5T5 823 aa19.16■□□□□ 0.66
CIITA-205ENST00000571186 LTBP3Q9NS15 1303 aa19.16■□□□□ 0.66
CIITA-205ENST00000571186 BCORQ6W2J9 1755 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 ARFGEF2Q9Y6D5 1785 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 SOGA3Q5TF21 947 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 CHADLQ6NUI6 762 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 CEMIPQ8WUJ3 1361 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 NPC1L1Q9UHC9 1359 aa19.15■□□□□ 0.66
CIITA-205ENST00000571186 NBPF5PQ86XG9 351 aaPredicted RBP19.14■□□□□ 0.65
CIITA-205ENST00000571186 CFAP53Q96M91 514 aa19.14■□□□□ 0.65
CIITA-205ENST00000571186 PRAMEF22A3QJZ6 481 aa19.13■□□□□ 0.65
CIITA-205ENST00000571186 RSPH6AQ9H0K4 717 aa19.13■□□□□ 0.65
CIITA-205ENST00000571186 SNRPA1P09661 255 aaKnown RBP19.12■□□□□ 0.65
CIITA-205ENST00000571186 POTEIP0CG38 1075 aa19.12■□□□□ 0.65
CIITA-205ENST00000571186 POTEJP0CG39 1038 aa19.12■□□□□ 0.65
CIITA-205ENST00000571186 CLEC4GQ6UXB4 293 aa19.12■□□□□ 0.65
CIITA-205ENST00000571186 RTF1Q92541 710 aaKnown RBP19.12■□□□□ 0.65
CIITA-205ENST00000571186 MKRN1Q9UHC7 482 aaKnown RBP19.12■□□□□ 0.65
CIITA-205ENST00000571186 NUDCQ9Y266 331 aa19.12■□□□□ 0.65
CIITA-205ENST00000571186 ZNF652Q9Y2D9 606 aa19.12■□□□□ 0.65
CIITA-205ENST00000571186 MCM10Q7L590 875 aa19.11■□□□□ 0.65
CIITA-205ENST00000571186 CREBZFQ9NS37 354 aa19.11■□□□□ 0.65
CIITA-205ENST00000571186 SCN4AP35499 1836 aa19.1■□□□□ 0.65
CIITA-205ENST00000571186 FAM177BA6PVY3 158 aa19.1■□□□□ 0.65
CIITA-205ENST00000571186 CCDC93Q567U6 631 aa19.1■□□□□ 0.65
CIITA-205ENST00000571186 TPTE2Q6XPS3 522 aa19.1■□□□□ 0.65
CIITA-205ENST00000571186 IQCA1LA6NCM1 817 aa19.09■□□□□ 0.65
CIITA-205ENST00000571186 U2AF1L5P0DN76 240 aaPredicted RBP19.09■□□□□ 0.65
CIITA-205ENST00000571186 NPR1P16066 1061 aa19.09■□□□□ 0.65
CIITA-205ENST00000571186 U2AF1Q01081 240 aaKnown RBP eCLIP19.09■□□□□ 0.65
CIITA-205ENST00000571186 C7orf43Q8WVR3 580 aa19.09■□□□□ 0.65
CIITA-205ENST00000571186 NIP7Q9Y221 180 aaKnown RBP eCLIP19.09■□□□□ 0.65
CIITA-205ENST00000571186 DCTN1Q14203 1278 aa19.07■□□□□ 0.64
CIITA-205ENST00000571186 LDHDQ86WU2 507 aa19.07■□□□□ 0.64
CIITA-205ENST00000571186 TAF1DQ9H5J8 278 aaPredicted RBP19.07■□□□□ 0.64
CIITA-205ENST00000571186 ZNF277Q9NRM2 450 aaPredicted RBP19.07■□□□□ 0.64
CIITA-205ENST00000571186 NBPF26B4DH59 902 aa19.06■□□□□ 0.64
CIITA-205ENST00000571186 GTF2E1P29083 439 aaPredicted RBP19.06■□□□□ 0.64
CIITA-205ENST00000571186 FKBP4Q02790 459 aaKnown RBP eCLIP19.06■□□□□ 0.64
CIITA-205ENST00000571186 EAPPQ56P03 285 aaPredicted RBP19.06■□□□□ 0.64
CIITA-205ENST00000571186 NBPF10Q6P3W6 841 aaKnown RBP19.06■□□□□ 0.64
CIITA-205ENST00000571186 OLFM4Q6UX06 510 aa19.06■□□□□ 0.64
CIITA-205ENST00000571186 NBPF15Q8N660 670 aa19.06■□□□□ 0.64
CIITA-205ENST00000571186 KLRG2A4D1S0 409 aaPredicted RBP19.05■□□□□ 0.64
CIITA-205ENST00000571186 RTKN2Q8IZC4 609 aa19.05■□□□□ 0.64
CIITA-205ENST00000571186 L3MBTL3Q96JM7 780 aaPredicted RBP19.05■□□□□ 0.64
CIITA-205ENST00000571186 CLEC11AQ9Y240 323 aa19.05■□□□□ 0.64
CIITA-205ENST00000571186 ALDH1B1P30837 517 aa19.04■□□□□ 0.64
CIITA-205ENST00000571186 NUP98P52948 1817 aa19.03■□□□□ 0.64
CIITA-205ENST00000571186 TAF7Q15545 349 aaPredicted RBP19.03■□□□□ 0.64
CIITA-205ENST00000571186 HLFQ16534 295 aa19.03■□□□□ 0.64
CIITA-205ENST00000571186 SYNE4Q8N205 404 aa19.03■□□□□ 0.64
CIITA-205ENST00000571186 NGEFQ8N5V2 710 aa19.03■□□□□ 0.64
CIITA-205ENST00000571186 MIS18AQ9NYP9 233 aa19.03■□□□□ 0.64
CIITA-205ENST00000571186 PASKQ96RG2 1323 aa19.02■□□□□ 0.64
CIITA-205ENST00000571186 ZNF541Q9H0D2 1346 aa19.02■□□□□ 0.64
CIITA-205ENST00000571186 HTATSF1O43719 755 aaKnown RBP19.02■□□□□ 0.64
CIITA-205ENST00000571186 PPP2R1AP30153 589 aa19.02■□□□□ 0.64
CIITA-205ENST00000571186 HACL1Q9UJ83 578 aa19.02■□□□□ 0.64
CIITA-205ENST00000571186 CNTNAP1P78357 1384 aa19.02■□□□□ 0.64
CIITA-205ENST00000571186 TMEM88BA6NKF7 163 aa19.01■□□□□ 0.63
CIITA-205ENST00000571186 RGL2O15211 777 aa19.01■□□□□ 0.63
CIITA-205ENST00000571186 ZEB1P37275 1124 aaPredicted RBP19.01■□□□□ 0.63
CIITA-205ENST00000571186 IARSP41252 1262 aaKnown RBP19.01■□□□□ 0.63
CIITA-205ENST00000571186 DLG5Q8TDM6 1919 aa19.01■□□□□ 0.63
CIITA-205ENST00000571186 FOXN1O15353 648 aa19■□□□□ 0.63
CIITA-205ENST00000571186 ITGBL1O95965 494 aaPredicted RBP19■□□□□ 0.63
CIITA-205ENST00000571186 EPHX2P34913 555 aa19■□□□□ 0.63
CIITA-205ENST00000571186 VEGFBP49765 207 aa18.99■□□□□ 0.63
CIITA-205ENST00000571186 AIDAQ96BJ3 306 aa18.99■□□□□ 0.63
CIITA-205ENST00000571186 FZD9O00144 591 aa18.98■□□□□ 0.63
CIITA-205ENST00000571186 PNMA8AQ86V59 439 aaPredicted RBP18.98■□□□□ 0.63
CIITA-205ENST00000571186 NUTM1Q86Y26 1132 aa18.98■□□□□ 0.63
CIITA-205ENST00000571186 JDP2Q8WYK2 163 aa18.98■□□□□ 0.63
CIITA-205ENST00000571186 NYXQ9GZU5 481 aa18.98■□□□□ 0.63
CIITA-205ENST00000571186 RRP7AQ9Y3A4 280 aaKnown RBP18.98■□□□□ 0.63
CIITA-205ENST00000571186 RNF123Q5XPI4 1314 aa18.98■□□□□ 0.63
CIITA-205ENST00000571186 LAMB4A4D0S4 1761 aa18.97■□□□□ 0.63
CIITA-205ENST00000571186 NEFMP07197 916 aa18.97■□□□□ 0.63
CIITA-205ENST00000571186 CNTROBQ8N137 903 aa18.97■□□□□ 0.63
CIITA-205ENST00000571186 DDX10Q13206 875 aaKnown RBP18.96■□□□□ 0.63
CIITA-205ENST00000571186 MAP1SQ66K74 1059 aaPredicted RBP18.96■□□□□ 0.63
CIITA-205ENST00000571186 GPC2Q8N158 579 aa18.96■□□□□ 0.63
CIITA-205ENST00000571186 RPGRQ92834 1020 aaKnown RBP18.96■□□□□ 0.63
CIITA-205ENST00000571186 GJA3Q9Y6H8 435 aa18.96■□□□□ 0.63
CIITA-205ENST00000571186 ERVV-1B6SEH8 477 aa18.95■□□□□ 0.62
CIITA-205ENST00000571186 CTCFP49711 727 aaPredicted RBP18.95■□□□□ 0.62
CIITA-205ENST00000571186 EIF6P56537 245 aaKnown RBP18.95■□□□□ 0.62
CIITA-205ENST00000571186 KIF6Q6ZMV9 814 aa18.95■□□□□ 0.62
CIITA-205ENST00000571186 TTLL7Q6ZT98 887 aa18.95■□□□□ 0.62
CIITA-205ENST00000571186 PNISRQ8TF01 805 aaKnown RBP18.95■□□□□ 0.62
CIITA-205ENST00000571186 PSMD1Q99460 953 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms