RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NRXN2Q9P2S2 1712 aa15.11■□□□□ 0.01
VPS53-207ENST00000570510 CAPNS2Q96L46 248 aa15.1■□□□□ 0.01
VPS53-207ENST00000570510 GPR101Q96P66 508 aaPredicted RBP15.1■□□□□ 0.01
VPS53-207ENST00000570510 TBC1D2BQ9UPU7 963 aa15.1■□□□□ 0.01
VPS53-207ENST00000570510 ADAMTS7Q9UKP4 1686 aa15.09■□□□□ 0.01
VPS53-207ENST00000570510 RNMTO43148 476 aaKnown RBP15.09■□□□□ 0.01
VPS53-207ENST00000570510 SRGNP10124 158 aa15.09■□□□□ 0.01
VPS53-207ENST00000570510 EIF5P55010 431 aaKnown RBP15.09■□□□□ 0.01
VPS53-207ENST00000570510 MORC1Q86VD1 984 aa15.09■□□□□ 0.01
VPS53-207ENST00000570510 ZNF277Q9NRM2 450 aaPredicted RBP15.09■□□□□ 0.01
VPS53-207ENST00000570510 RNF123Q5XPI4 1314 aa15.09■□□□□ 0.01
VPS53-207ENST00000570510 DICER1Q9UPY3 1922 aaKnown RBP15.09■□□□□ 0.01
VPS53-207ENST00000570510 LMOD1P29536 600 aaPredicted RBP15.08■□□□□ 0
VPS53-207ENST00000570510 FKBP4Q02790 459 aaKnown RBP eCLIP15.08■□□□□ 0
VPS53-207ENST00000570510 JDP2Q8WYK2 163 aa15.08■□□□□ 0
VPS53-207ENST00000570510 TEX13AQ9BXU3 409 aaPredicted RBP15.08■□□□□ 0
VPS53-207ENST00000570510 DDX21Q9NR30 783 aaKnown RBP eCLIP15.08■□□□□ 0
VPS53-207ENST00000570510 ZNF541Q9H0D2 1346 aa15.08■□□□□ 0
VPS53-207ENST00000570510 SCN4AP35499 1836 aa15.08■□□□□ 0
VPS53-207ENST00000570510 FER1L6Q2WGJ9 1857 aa15.08■□□□□ 0
VPS53-207ENST00000570510 RTKN2Q8IZC4 609 aa15.07■□□□□ 0
VPS53-207ENST00000570510 TSKSQ9UJT2 592 aa15.07■□□□□ 0
VPS53-207ENST00000570510 CYP4F22Q6NT55 531 aa15.06■□□□□ 0
VPS53-207ENST00000570510 NBPF5PQ86XG9 351 aaPredicted RBP15.06■□□□□ 0
VPS53-207ENST00000570510 GPC2Q8N158 579 aa15.06■□□□□ 0
VPS53-207ENST00000570510 GJA3Q9Y6H8 435 aa15.06■□□□□ 0
VPS53-207ENST00000570510 VIRMAQ69YN4 1812 aaKnown RBP15.06■□□□□ 0
VPS53-207ENST00000570510 NPR1P16066 1061 aa15.05■□□□□ -0
VPS53-207ENST00000570510 CLSPNQ9HAW4 1339 aa15.05■□□□□ -0
VPS53-207ENST00000570510 CA12O43570 354 aa15.04■□□□□ -0
VPS53-207ENST00000570510 IL6STP40189 918 aaPredicted RBP15.04■□□□□ -0
VPS53-207ENST00000570510 EIF6P56537 245 aaKnown RBP15.04■□□□□ -0
VPS53-207ENST00000570510 MCOLN1Q9GZU1 580 aa15.04■□□□□ -0
VPS53-207ENST00000570510 MAP2K2P36507 400 aa15.03■□□□□ -0
VPS53-207ENST00000570510 IARSP41252 1262 aaKnown RBP15.03■□□□□ -0
VPS53-207ENST00000570510 TEFQ10587 303 aa15.03■□□□□ -0
VPS53-207ENST00000570510 SCN11AQ9UI33 1791 aa15.03■□□□□ -0
VPS53-207ENST00000570510 SLX4Q8IY92 1834 aa15.02■□□□□ -0
VPS53-207ENST00000570510 FZD9O00144 591 aa15.02■□□□□ -0
VPS53-207ENST00000570510 HMOX1P09601 288 aa15.02■□□□□ -0
VPS53-207ENST00000570510 GTF2E1P29083 439 aaPredicted RBP15.02■□□□□ -0
VPS53-207ENST00000570510 IL13P35225 146 aa15.02■□□□□ -0
VPS53-207ENST00000570510 DGKZQ13574 1117 aa15.02■□□□□ -0
VPS53-207ENST00000570510 DZIP3Q86Y13 1208 aaKnown RBP15.02■□□□□ -0
VPS53-207ENST00000570510 SYNE4Q8N205 404 aa15.02■□□□□ -0
VPS53-207ENST00000570510 ZNF652Q9Y2D9 606 aa15.02■□□□□ -0
VPS53-207ENST00000570510 ANKRD31Q8N7Z5 1873 aa15.01□□□□□ -0.01
VPS53-207ENST00000570510 ALDH1B1P30837 517 aa15.01□□□□□ -0.01
VPS53-207ENST00000570510 TPTE2Q6XPS3 522 aa15.01□□□□□ -0.01
VPS53-207ENST00000570510 C7orf43Q8WVR3 580 aa15.01□□□□□ -0.01
VPS53-207ENST00000570510 PANK3Q9H999 370 aa15.01□□□□□ -0.01
VPS53-207ENST00000570510 AOC2O75106 756 aa15□□□□□ -0.01
VPS53-207ENST00000570510 CAMTA2O94983 1202 aa15□□□□□ -0.01
VPS53-207ENST00000570510 A1BGP04217 495 aa15□□□□□ -0.01
VPS53-207ENST00000570510 MTHFSDQ2M296 383 aaKnown RBP15□□□□□ -0.01
VPS53-207ENST00000570510 ZNF496Q96IT1 587 aaPredicted RBP15□□□□□ -0.01
VPS53-207ENST00000570510 COL11A2P13942 1736 aaPredicted RBP15□□□□□ -0.01
VPS53-207ENST00000570510 FAM177BA6PVY3 158 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 ZNF790Q6PG37 636 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 OLFM4Q6UX06 510 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 FMNL2Q96PY5 1086 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 TIMELESSQ9UNS1 1208 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 TLL2Q9Y6L7 1015 aa14.99□□□□□ -0.01
VPS53-207ENST00000570510 HEG1Q9ULI3 1381 aa14.98□□□□□ -0.01
VPS53-207ENST00000570510 CACNA1SQ13698 1873 aa14.98□□□□□ -0.01
VPS53-207ENST00000570510 MRC1P22897 1456 aa14.98□□□□□ -0.01
VPS53-207ENST00000570510 FMR1Q06787 632 aaKnown RBP eCLIP14.98□□□□□ -0.012e-18■■■■■ 64.9
VPS53-207ENST00000570510 CLEC4GQ6UXB4 293 aa14.98□□□□□ -0.01
VPS53-207ENST00000570510 USP50Q70EL3 339 aaPredicted RBP14.98□□□□□ -0.01
VPS53-207ENST00000570510 KNSTRNQ9Y448 316 aa14.98□□□□□ -0.01
VPS53-207ENST00000570510 TRAF5O00463 557 aa14.97□□□□□ -0.01
VPS53-207ENST00000570510 EPS15P42566 896 aa14.97□□□□□ -0.01
VPS53-207ENST00000570510 CST9Q5W186 159 aa14.97□□□□□ -0.01
VPS53-207ENST00000570510 CELF2O95319 508 aaKnown RBP14.96□□□□□ -0.01
VPS53-207ENST00000570510 BRPF1P55201 1214 aaPredicted RBP14.96□□□□□ -0.01
VPS53-207ENST00000570510 LARGE2Q8N3Y3 721 aa14.96□□□□□ -0.01
VPS53-207ENST00000570510 PSMD1Q99460 953 aa14.96□□□□□ -0.01
VPS53-207ENST00000570510 ZNF408Q9H9D4 720 aa14.96□□□□□ -0.01
VPS53-207ENST00000570510 NIP7Q9Y221 180 aaKnown RBP eCLIP14.96□□□□□ -0.01
VPS53-207ENST00000570510 CC2D2BQ6DHV5 1058 aa14.95□□□□□ -0.02
VPS53-207ENST00000570510 TMX4Q9H1E5 349 aaPredicted RBP14.95□□□□□ -0.02
VPS53-207ENST00000570510 ADAMTSL1Q8N6G6 1762 aa14.95□□□□□ -0.02
VPS53-207ENST00000570510 SCN7AQ01118 1682 aa14.94□□□□□ -0.02
VPS53-207ENST00000570510 SAPCD2Q86UD0 394 aa14.94□□□□□ -0.02
VPS53-207ENST00000570510 NIM1KQ8IY84 436 aa14.94□□□□□ -0.02
VPS53-207ENST00000570510 KLRG2A4D1S0 409 aaPredicted RBP14.93□□□□□ -0.02
VPS53-207ENST00000570510 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
VPS53-207ENST00000570510 PIP4K2AP48426 406 aaPredicted RBP14.93□□□□□ -0.02
VPS53-207ENST00000570510 SCNN1DP51172 638 aa14.93□□□□□ -0.02
VPS53-207ENST00000570510 GRIPAP1Q4V328 841 aa14.93□□□□□ -0.02
VPS53-207ENST00000570510 CIAPIN1Q6FI81 312 aa14.93□□□□□ -0.02
VPS53-207ENST00000570510 RPGRQ92834 1020 aaKnown RBP14.93□□□□□ -0.02
VPS53-207ENST00000570510 BTBD11A6QL63 1104 aa14.92□□□□□ -0.02
VPS53-207ENST00000570510 DIAPH1O60610 1272 aaKnown RBP14.92□□□□□ -0.02
VPS53-207ENST00000570510 SOX10P56693 466 aa14.92□□□□□ -0.02
VPS53-207ENST00000570510 GAS2L2Q8NHY3 880 aa14.92□□□□□ -0.02
VPS53-207ENST00000570510 HHIPL1Q96JK4 782 aa14.92□□□□□ -0.02
VPS53-207ENST00000570510 ADARB2Q9NS39 739 aaKnown RBP14.92□□□□□ -0.02
VPS53-207ENST00000570510 ARFGEF2Q9Y6D5 1785 aa14.92□□□□□ -0.02
VPS53-207ENST00000570510 NOGQ13253 232 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms