RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ALDH1L2Q3SY69 923 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 COPS6Q7L5N1 327 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 SGIP1Q9BQI5 828 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 BCL2L13Q9BXK5 485 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 KIAA1551Q9HCM1 1747 aa11.95□□□□□ -0.5
VPS35-211ENST00000569950 TRAPPC3LQ5T215 181 aa11.95□□□□□ -0.5
VPS35-211ENST00000569950 HYPKQ9NX55 129 aa11.95□□□□□ -0.5
VPS35-211ENST00000569950 TNNQ9UQP3 1299 aa11.95□□□□□ -0.5
VPS35-211ENST00000569950 ANKRD31Q8N7Z5 1873 aa11.95□□□□□ -0.5
VPS35-211ENST00000569950 ATP10DQ9P241 1426 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 MAP3K15Q6ZN16 1313 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 FLIIQ13045 1269 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 FKBP8Q14318 412 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 USPL1Q5W0Q7 1092 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 DZIP3Q86Y13 1208 aaKnown RBP11.94□□□□□ -0.5
VPS35-211ENST00000569950 KIF13BQ9NQT8 1826 aa11.94□□□□□ -0.5
VPS35-211ENST00000569950 RGL2O15211 777 aa11.93□□□□□ -0.5
VPS35-211ENST00000569950 HMGB2P26583 209 aaKnown RBP11.93□□□□□ -0.5
VPS35-211ENST00000569950 TM4SF1P30408 202 aa11.93□□□□□ -0.5
VPS35-211ENST00000569950 DDR1Q08345 913 aa11.93□□□□□ -0.5
VPS35-211ENST00000569950 FLAD1Q8NFF5 587 aa11.93□□□□□ -0.5
VPS35-211ENST00000569950 UBN2Q6ZU65 1347 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 DDX60Q8IY21 1712 aaKnown RBP11.92□□□□□ -0.5
VPS35-211ENST00000569950 A0A087WZG4 1122 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 ERVV-1B6SEH8 477 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 PTGER2P43116 358 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 AIMP1Q12904 312 aaKnown RBP11.92□□□□□ -0.5
VPS35-211ENST00000569950 PLBD2Q8NHP8 589 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 STK31Q9BXU1 1019 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 ZBTB3Q9H5J0 574 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 SMC4Q9NTJ3 1288 aa11.92□□□□□ -0.5
VPS35-211ENST00000569950 ZNF330Q9Y3S2 320 aaPredicted RBP11.92□□□□□ -0.5
VPS35-211ENST00000569950 TNRC6CQ9HCJ0 1690 aaKnown RBP11.91□□□□□ -0.5
VPS35-211ENST00000569950 LRP5O75197 1615 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 PI4KAP2A4QPH2 592 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 F6X3S4 739 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 IGKV5-2P06315 115 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 RFC4P35249 363 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 NFIXQ14938 502 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 TBC1D9BQ66K14 1250 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 GIGYF2Q6Y7W6 1299 aaKnown RBP11.91□□□□□ -0.5
VPS35-211ENST00000569950 ANKRD13DQ6ZTN6 518 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 ZNF34Q8IZ26 560 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 PI4KAP1Q8N8J0 262 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 SLC16A10Q8TF71 515 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 ISCA1Q9BUE6 129 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 LAMB2P55268 1798 aa11.91□□□□□ -0.5
VPS35-211ENST00000569950 RNF123Q5XPI4 1314 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 PXDNLA1KZ92 1463 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 ZBTB7AO95365 584 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 MSL1Q68DK7 614 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 CLEC4GQ6UXB4 293 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 KSR2Q6VAB6 950 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 CHMP4AQ9BY43 222 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 RCAN3Q9UKA8 241 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 NOB1Q9ULX3 412 aaKnown RBP11.9□□□□□ -0.5
VPS35-211ENST00000569950 MAP3K2Q9Y2U5 619 aa11.9□□□□□ -0.5
VPS35-211ENST00000569950 COL11A2P13942 1736 aaPredicted RBP11.89□□□□□ -0.51
VPS35-211ENST00000569950 POLRMTO00411 1230 aaKnown RBP11.89□□□□□ -0.51
VPS35-211ENST00000569950 TRIM27P14373 513 aa11.89□□□□□ -0.51
VPS35-211ENST00000569950 METTL22Q9BUU2 404 aaPredicted RBP11.89□□□□□ -0.51
VPS35-211ENST00000569950 ABCC4O15439 1325 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 PTPRCP08575 1304 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 COL4A1P02462 1669 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 ZPR1O75312 459 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 RLBP1P12271 317 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 TRIM28Q13263 835 aaKnown RBP11.88□□□□□ -0.51
VPS35-211ENST00000569950 FKBP5Q13451 457 aaPredicted RBP11.88□□□□□ -0.51
VPS35-211ENST00000569950 TCIRG1Q13488 830 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 BEND3Q5T5X7 828 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 KIF6Q6ZMV9 814 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 MTFR1LQ9H019 292 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 CARMIL3Q8ND23 1372 aa11.88□□□□□ -0.51
VPS35-211ENST00000569950 IBTKQ9P2D0 1353 aaPredicted RBP11.88□□□□□ -0.51
VPS35-211ENST00000569950 GOLGB1Q14789 3259 aaKnown RBP11.88□□□□□ -0.51
VPS35-211ENST00000569950 DLEC1Q9Y238 1755 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 BRCA1P38398 1863 aaKnown RBP11.87□□□□□ -0.51
VPS35-211ENST00000569950 MMP10P09238 476 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 NLRP10Q86W26 655 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 NLGN1Q8N2Q7 840 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 DNAAF4Q8WXU2 420 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 ARHGAP45Q92619 1136 aa11.87□□□□□ -0.51
VPS35-211ENST00000569950 ATF5Q9Y2D1 282 aaPredicted RBP11.87□□□□□ -0.51
VPS35-211ENST00000569950 KIF16BQ96L93 1317 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 C10orf71Q711Q0 1435 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 MYH3P11055 1940 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 ATP5J2-PTCD1G3V325 749 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 NTSR2O95665 410 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 GPTP24298 496 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 CASP7P55210 303 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 CWF19L2Q2TBE0 894 aaKnown RBP11.86□□□□□ -0.51
VPS35-211ENST00000569950 SUSD4Q5VX71 490 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 ATF7IPQ6VMQ6 1270 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 SYNE4Q8N205 404 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 MYD88Q99836 296 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 ABCC12Q96J65 1359 aa11.86□□□□□ -0.51
VPS35-211ENST00000569950 NEURL1BA8MQ27 555 aa11.85□□□□□ -0.51
VPS35-211ENST00000569950 PLIN1O60240 522 aa11.85□□□□□ -0.51
VPS35-211ENST00000569950 C20orf194Q5TEA3 1177 aa11.85□□□□□ -0.51
VPS35-211ENST00000569950 RIC3Q7Z5B4 369 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms