RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 ZNF330Q9Y3S2 320 aaPredicted RBP13.53□□□□□ -0.24
VPS39-211ENST00000568755 PDE6BP35913 854 aa13.52□□□□□ -0.25
VPS39-211ENST00000568755 CCDC24Q8N4L8 307 aa13.52□□□□□ -0.25
VPS39-211ENST00000568755 SMC1BQ8NDV3 1235 aa13.52□□□□□ -0.25
VPS39-211ENST00000568755 KLRG1Q96E93 195 aa13.52□□□□□ -0.25
VPS39-211ENST00000568755 USP16Q9Y5T5 823 aa13.52□□□□□ -0.25
VPS39-211ENST00000568755 U3KPZ7 1027 aaPredicted RBP13.52□□□□□ -0.25
VPS39-211ENST00000568755 PRAMEF22A3QJZ6 481 aa13.51□□□□□ -0.25
VPS39-211ENST00000568755 PPP2R1AP30153 589 aa13.51□□□□□ -0.25
VPS39-211ENST00000568755 DZIP3Q86Y13 1208 aaKnown RBP13.51□□□□□ -0.25
VPS39-211ENST00000568755 JMYQ8N9B5 988 aa13.51□□□□□ -0.25
VPS39-211ENST00000568755 CNBD1Q8NA66 436 aa13.51□□□□□ -0.25
VPS39-211ENST00000568755 ZNF622Q969S3 477 aaKnown RBP eCLIP13.51□□□□□ -0.25
VPS39-211ENST00000568755 SETDB2Q96T68 719 aa13.51□□□□□ -0.25
VPS39-211ENST00000568755 SCN4AP35499 1836 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 LTBP3Q9NS15 1303 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 POTECB2RU33 542 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 C21orf2O43822 256 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 VEGFAP15692 232 aaPredicted RBP13.5□□□□□ -0.25
VPS39-211ENST00000568755 PIP4K2AP48426 406 aaPredicted RBP13.5□□□□□ -0.25
VPS39-211ENST00000568755 MCM10Q7L590 875 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 NUDCQ9Y266 331 aa13.5□□□□□ -0.25
VPS39-211ENST00000568755 SNRPA1P09661 255 aaKnown RBP13.49□□□□□ -0.25
VPS39-211ENST00000568755 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
VPS39-211ENST00000568755 SRGNP10124 158 aa13.49□□□□□ -0.25
VPS39-211ENST00000568755 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS39-211ENST00000568755 STYK1Q6J9G0 422 aa13.49□□□□□ -0.25
VPS39-211ENST00000568755 ST5P78524 1137 aa13.48□□□□□ -0.25
VPS39-211ENST00000568755 CLEC4GQ6UXB4 293 aa13.48□□□□□ -0.25
VPS39-211ENST00000568755 NPM2Q86SE8 214 aaKnown RBP13.48□□□□□ -0.25
VPS39-211ENST00000568755 RTF1Q92541 710 aaKnown RBP13.48□□□□□ -0.25
VPS39-211ENST00000568755 CNKSR1Q969H4 720 aa13.48□□□□□ -0.25
VPS39-211ENST00000568755 ZNF219Q9P2Y4 722 aaPredicted RBP13.48□□□□□ -0.25
VPS39-211ENST00000568755 NBPF26B4DH59 902 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 RGL2O15211 777 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 HTATSF1O43719 755 aaKnown RBP13.47□□□□□ -0.25
VPS39-211ENST00000568755 DCTN1Q14203 1278 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 ERFEQ4G0M1 354 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 PRPF40BQ6NWY9 871 aaKnown RBP13.47□□□□□ -0.25
VPS39-211ENST00000568755 NBPF10Q6P3W6 841 aaKnown RBP13.47□□□□□ -0.25
VPS39-211ENST00000568755 NBPF15Q8N660 670 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 MASTLQ96GX5 879 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 TAOK3Q9H2K8 898 aa13.47□□□□□ -0.25
VPS39-211ENST00000568755 KLRG2A4D1S0 409 aaPredicted RBP13.46□□□□□ -0.25
VPS39-211ENST00000568755 C7orf43Q8WVR3 580 aa13.46□□□□□ -0.25
VPS39-211ENST00000568755 NPHP1O15259 732 aa13.45□□□□□ -0.26
VPS39-211ENST00000568755 DPY19L2Q6NUT2 758 aa13.45□□□□□ -0.26
VPS39-211ENST00000568755 NBPF5PQ86XG9 351 aaPredicted RBP13.45□□□□□ -0.26
VPS39-211ENST00000568755 ZNF652Q9Y2D9 606 aa13.45□□□□□ -0.26
VPS39-211ENST00000568755 TAF7Q15545 349 aaPredicted RBP13.44□□□□□ -0.26
VPS39-211ENST00000568755 SOGA3Q5TF21 947 aa13.44□□□□□ -0.26
VPS39-211ENST00000568755 ADAMTSL1Q8N6G6 1762 aa13.43□□□□□ -0.26
VPS39-211ENST00000568755 NPR1P16066 1061 aa13.43□□□□□ -0.26
VPS39-211ENST00000568755 NIP7Q9Y221 180 aaKnown RBP eCLIP13.43□□□□□ -0.26
VPS39-211ENST00000568755 SNED1Q8TER0 1413 aa13.42□□□□□ -0.26
VPS39-211ENST00000568755 DDNO94850 711 aaPredicted RBP13.42□□□□□ -0.26
VPS39-211ENST00000568755 HLFQ16534 295 aa13.42□□□□□ -0.26
VPS39-211ENST00000568755 TPTE2Q6XPS3 522 aa13.42□□□□□ -0.26
VPS39-211ENST00000568755 MIS18AQ9NYP9 233 aa13.42□□□□□ -0.26
VPS39-211ENST00000568755 ANKRD36CQ5JPF3 1778 aa13.41□□□□□ -0.26
VPS39-211ENST00000568755 POTEIP0CG38 1075 aa13.41□□□□□ -0.26
VPS39-211ENST00000568755 POTEJP0CG39 1038 aa13.41□□□□□ -0.26
VPS39-211ENST00000568755 CCDC93Q567U6 631 aa13.41□□□□□ -0.26
VPS39-211ENST00000568755 COL13A1Q5TAT6 717 aaPredicted RBP13.41□□□□□ -0.26
VPS39-211ENST00000568755 PLEKHF1Q96S99 279 aa13.41□□□□□ -0.26
VPS39-211ENST00000568755 FKBP4Q02790 459 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS39-211ENST00000568755 CHADLQ6NUI6 762 aa13.4□□□□□ -0.26
VPS39-211ENST00000568755 L3MBTL3Q96JM7 780 aaPredicted RBP13.4□□□□□ -0.26
VPS39-211ENST00000568755 ABCC12Q96J65 1359 aa13.4□□□□□ -0.26
VPS39-211ENST00000568755 LAMB2P55268 1798 aa13.4□□□□□ -0.26
VPS39-211ENST00000568755 EIF4A1P60842 406 aaKnown RBP13.39□□□□□ -0.27
VPS39-211ENST00000568755 OLFM4Q6UX06 510 aa13.39□□□□□ -0.27
VPS39-211ENST00000568755 PNISRQ8TF01 805 aaKnown RBP13.39□□□□□ -0.27
VPS39-211ENST00000568755 RIC1Q4ADV7 1423 aa13.39□□□□□ -0.27
VPS39-211ENST00000568755 IBTKQ9P2D0 1353 aaPredicted RBP13.38□□□□□ -0.27
VPS39-211ENST00000568755 FAM177BA6PVY3 158 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 ERVV-1B6SEH8 477 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 NFE2L2Q16236 605 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 CRY2Q49AN0 593 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 ZNF277Q9NRM2 450 aaPredicted RBP13.38□□□□□ -0.27
VPS39-211ENST00000568755 MAP3K15Q6ZN16 1313 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 ZNF541Q9H0D2 1346 aa13.38□□□□□ -0.27
VPS39-211ENST00000568755 COL4A5P29400 1685 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 IQCA1LA6NCM1 817 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 HSPA1AP0DMV8 641 aaKnown RBP13.37□□□□□ -0.27
VPS39-211ENST00000568755 HSPA1BP0DMV9 641 aaKnown RBP13.37□□□□□ -0.27
VPS39-211ENST00000568755 TTLL7Q6ZT98 887 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 RTKN2Q8IZC4 609 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 THUMPD2Q9BTF0 503 aaKnown RBP13.37□□□□□ -0.27
VPS39-211ENST00000568755 TAF1DQ9H5J8 278 aaPredicted RBP13.37□□□□□ -0.27
VPS39-211ENST00000568755 CREBZFQ9NS37 354 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 TRPM7Q96QT4 1865 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 UBN2Q6ZU65 1347 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 PASKQ96RG2 1323 aa13.37□□□□□ -0.27
VPS39-211ENST00000568755 LTBP1Q14766 1721 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 NEFMP07197 916 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 ALDH1B1P30837 517 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 LDHDQ86WU2 507 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 NUTM1Q86Y26 1132 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 NYXQ9GZU5 481 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms