RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 CANXP27824 592 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-207ENST00000568691 CAPNS2Q96L46 248 aa16.28■□□□□ 0.2
VPS9D1-207ENST00000568691 HACL1Q9UJ83 578 aa16.28■□□□□ 0.2
VPS9D1-207ENST00000568691 RNF123Q5XPI4 1314 aa16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 STYK1Q6J9G0 422 aa16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 CYP4F22Q6NT55 531 aa16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 DDX21Q9NR30 783 aaKnown RBP eCLIP16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 ZNF277Q9NRM2 450 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 ABT1Q9ULW3 272 aaKnown RBP16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 PDZRN3Q9UPQ7 1066 aa16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 CLEC11AQ9Y240 323 aa16.27■□□□□ 0.2
VPS9D1-207ENST00000568691 CST9Q5W186 159 aa16.26■□□□□ 0.19
VPS9D1-207ENST00000568691 SCN7AQ01118 1682 aa16.26■□□□□ 0.19
VPS9D1-207ENST00000568691 ARFGEF2Q9Y6D5 1785 aa16.26■□□□□ 0.19
VPS9D1-207ENST00000568691 CACNA1SQ13698 1873 aa16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 COL4A5P29400 1685 aa16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 RNMTO43148 476 aaKnown RBP16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 AOC2O75106 756 aa16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 SULT6B1Q6IMI4 303 aa16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 CNKSR1Q969H4 720 aa16.25■□□□□ 0.19
VPS9D1-207ENST00000568691 FZD9O00144 591 aa16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 AKAP4Q5JQC9 854 aa16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 VSIG10Q8N0Z9 540 aa16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 GPR101Q96P66 508 aaPredicted RBP16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 TBC1D2BQ9UPU7 963 aa16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 SNED1Q8TER0 1413 aa16.24■□□□□ 0.19
VPS9D1-207ENST00000568691 FKBP4Q02790 459 aaKnown RBP eCLIP16.23■□□□□ 0.19
VPS9D1-207ENST00000568691 CDCA8Q53HL2 280 aa16.23■□□□□ 0.19
VPS9D1-207ENST00000568691 MASTLQ96GX5 879 aa16.23■□□□□ 0.19
VPS9D1-207ENST00000568691 UBR2Q8IWV8 1755 aa16.23■□□□□ 0.19
VPS9D1-207ENST00000568691 TRAF5O00463 557 aa16.22■□□□□ 0.19
VPS9D1-207ENST00000568691 CAMTA2O94983 1202 aa16.22■□□□□ 0.19
VPS9D1-207ENST00000568691 EIF4G2P78344 907 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS9D1-207ENST00000568691 PNMA8AQ86V59 439 aaPredicted RBP16.22■□□□□ 0.19
VPS9D1-207ENST00000568691 IL13P35225 146 aa16.21■□□□□ 0.19
VPS9D1-207ENST00000568691 CCDC93Q567U6 631 aa16.21■□□□□ 0.19
VPS9D1-207ENST00000568691 SOGA3Q5TF21 947 aa16.21■□□□□ 0.19
VPS9D1-207ENST00000568691 CNBD1Q8NA66 436 aa16.21■□□□□ 0.19
VPS9D1-207ENST00000568691 GRM1Q13255 1194 aa16.2■□□□□ 0.18
VPS9D1-207ENST00000568691 DIEXFQ68CQ4 756 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-207ENST00000568691 CFAP44Q96MT7 982 aa16.2■□□□□ 0.18
VPS9D1-207ENST00000568691 TLL2Q9Y6L7 1015 aa16.2■□□□□ 0.18
VPS9D1-207ENST00000568691 CASP8AP2Q9UKL3 1982 aa16.19■□□□□ 0.18
VPS9D1-207ENST00000568691 A0A087WZG4 1122 aa16.19■□□□□ 0.18
VPS9D1-207ENST00000568691 KLRG2A4D1S0 409 aaPredicted RBP16.19■□□□□ 0.18
VPS9D1-207ENST00000568691 SLC51AQ86UW1 340 aa16.19■□□□□ 0.18
VPS9D1-207ENST00000568691 EPS15P42566 896 aa16.18■□□□□ 0.18
VPS9D1-207ENST00000568691 ECE1P42892 770 aa16.18■□□□□ 0.18
VPS9D1-207ENST00000568691 SCNN1DP51172 638 aa16.18■□□□□ 0.18
VPS9D1-207ENST00000568691 GPC2Q8N158 579 aa16.18■□□□□ 0.18
VPS9D1-207ENST00000568691 ZNF496Q96IT1 587 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-207ENST00000568691 MAP2K2P36507 400 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 IARSP41252 1262 aaKnown RBP16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 DGKZQ13574 1117 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 PAXIP1Q6ZW49 1069 aaPredicted RBP16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 SYNE4Q8N205 404 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 ZIC5Q96T25 663 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 SETDB2Q96T68 719 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 BEGAINQ9BUH8 593 aa16.17■□□□□ 0.18
VPS9D1-207ENST00000568691 A1BGP04217 495 aa16.16■□□□□ 0.18
VPS9D1-207ENST00000568691 STARD3NLO95772 234 aa16.15■□□□□ 0.18
VPS9D1-207ENST00000568691 NPR1P16066 1061 aa16.15■□□□□ 0.18
VPS9D1-207ENST00000568691 IL6STP40189 918 aaPredicted RBP16.15■□□□□ 0.18
VPS9D1-207ENST00000568691 MTHFSDQ2M296 383 aaKnown RBP16.15■□□□□ 0.18
VPS9D1-207ENST00000568691 SAPCD2Q86UD0 394 aa16.15■□□□□ 0.18
VPS9D1-207ENST00000568691 HEG1Q9ULI3 1381 aa16.14■□□□□ 0.17
VPS9D1-207ENST00000568691 HSPA5P11021 654 aaKnown RBP16.14■□□□□ 0.17
VPS9D1-207ENST00000568691 ST5P78524 1137 aa16.14■□□□□ 0.17
VPS9D1-207ENST00000568691 ZNF330Q9Y3S2 320 aaPredicted RBP16.14■□□□□ 0.17
VPS9D1-207ENST00000568691 BCORQ6W2J9 1755 aa16.13■□□□□ 0.17
VPS9D1-207ENST00000568691 SOX10P56693 466 aa16.13■□□□□ 0.17
VPS9D1-207ENST00000568691 TRPM7Q96QT4 1865 aa16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 PIP4K2AP48426 406 aaPredicted RBP16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 BRPF1P55201 1214 aaPredicted RBP16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 CIAPIN1Q6FI81 312 aa16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 RTKN2Q8IZC4 609 aa16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 GJA3Q9Y6H8 435 aa16.12■□□□□ 0.17
VPS9D1-207ENST00000568691 CA12O43570 354 aa16.11■□□□□ 0.17
VPS9D1-207ENST00000568691 HMOX1P09601 288 aa16.11■□□□□ 0.17
VPS9D1-207ENST00000568691 PSMD1Q99460 953 aa16.11■□□□□ 0.17
VPS9D1-207ENST00000568691 KCNQ3O43525 872 aa16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 PRPF38BQ5VTL8 546 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 ZNF790Q6PG37 636 aa16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 NBPF5PQ86XG9 351 aaPredicted RBP16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 DZIP3Q86Y13 1208 aaKnown RBP16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 IL17REQ8NFR9 667 aa16.1■□□□□ 0.17
VPS9D1-207ENST00000568691 USP50Q70EL3 339 aaPredicted RBP16.09■□□□□ 0.17
VPS9D1-207ENST00000568691 PANK3Q9H999 370 aa16.09■□□□□ 0.17
VPS9D1-207ENST00000568691 PRAMEF22A3QJZ6 481 aa16.08■□□□□ 0.16
VPS9D1-207ENST00000568691 NPHP1O15259 732 aa16.08■□□□□ 0.16
VPS9D1-207ENST00000568691 CELF2O95319 508 aaKnown RBP16.08■□□□□ 0.16
VPS9D1-207ENST00000568691 HHIPL1Q96JK4 782 aa16.08■□□□□ 0.16
VPS9D1-207ENST00000568691 GLIS2Q9BZE0 524 aaPredicted RBP16.08■□□□□ 0.16
VPS9D1-207ENST00000568691 TTC5Q8N0Z6 440 aa16.07■□□□□ 0.16
VPS9D1-207ENST00000568691 USP16Q9Y5T5 823 aa16.07■□□□□ 0.16
VPS9D1-207ENST00000568691 SIPA1L3O60292 1781 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-207ENST00000568691 ABCC12Q96J65 1359 aa16.06■□□□□ 0.16
VPS9D1-207ENST00000568691 LMOD1P29536 600 aaPredicted RBP16.06■□□□□ 0.16
VPS9D1-207ENST00000568691 EIF6P56537 245 aaKnown RBP16.06■□□□□ 0.16
VPS9D1-207ENST00000568691 CLEC4GQ6UXB4 293 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms