RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SRSF11Q05519 484 aaKnown RBP5□□□□□ -1.61
VPS35-208ENST00000568612 ALDH16A1Q8IZ83 802 aa5□□□□□ -1.61
VPS35-208ENST00000568612 PRIMPOLQ96LW4 560 aa5□□□□□ -1.61
VPS35-208ENST00000568612 C2orf49Q9BVC5 232 aaPredicted RBP5□□□□□ -1.61
VPS35-208ENST00000568612 STK17AQ9UEE5 414 aa5□□□□□ -1.61
VPS35-208ENST00000568612 ZMIZ1Q9ULJ6 1067 aa5□□□□□ -1.61
VPS35-208ENST00000568612 ATG7O95352 703 aa4.99□□□□□ -1.61
VPS35-208ENST00000568612 MAPTP10636 758 aaKnown RBP4.99□□□□□ -1.61
VPS35-208ENST00000568612 CD33P20138 364 aa4.99□□□□□ -1.61
VPS35-208ENST00000568612 UBAP2LQ14157 1087 aaKnown RBP4.99□□□□□ -1.61
VPS35-208ENST00000568612 WHAMMQ8TF30 809 aa4.99□□□□□ -1.61
VPS35-208ENST00000568612 HSH2DQ96JZ2 352 aa4.99□□□□□ -1.61
VPS35-208ENST00000568612 ACIN1Q9UKV3 1341 aaKnown RBP4.98□□□□□ -1.61
VPS35-208ENST00000568612 MAP2K3P46734 347 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 SRPK2P78362 688 aaKnown RBP4.98□□□□□ -1.61
VPS35-208ENST00000568612 CTBSQ01459 385 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 ELOAQ14241 798 aaKnown RBP4.98□□□□□ -1.61
VPS35-208ENST00000568612 TMEM164Q5U3C3 297 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 C1orf53Q5VUE5 145 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 ZNF385CQ66K41 422 aaPredicted RBP4.98□□□□□ -1.61
VPS35-208ENST00000568612 LYPD4Q6UWN0 246 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 KLRG1Q96E93 195 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 CEP63Q96MT8 703 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 MKNK1Q9BUB5 465 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 ANKIB1Q9P2G1 1089 aa4.98□□□□□ -1.61
VPS35-208ENST00000568612 FOXO3O43524 673 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 SLURP2P0DP57 97 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 LORP23490 312 aaPredicted RBP4.97□□□□□ -1.61
VPS35-208ENST00000568612 WEE1P30291 646 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 HIRAP54198 1017 aaPredicted RBP4.97□□□□□ -1.61
VPS35-208ENST00000568612 TNP2Q05952 138 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 SWI5Q1ZZU3 235 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 STAG2Q8N3U4 1231 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 ZNF280CQ8ND82 737 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 SUSD3Q96L08 255 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 NDFIP2Q9NV92 336 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 PRR12Q9ULL5 1215 aa4.97□□□□□ -1.61
VPS35-208ENST00000568612 GPC6Q9Y625 555 aaPredicted RBP4.97□□□□□ -1.61
VPS35-208ENST00000568612 CELA2BP08218 269 aaPredicted RBP4.96□□□□□ -1.62
VPS35-208ENST00000568612 FAM157BP0CG42 384 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 FKBP5Q13451 457 aaPredicted RBP4.96□□□□□ -1.62
VPS35-208ENST00000568612 HIF1AQ16665 826 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 RTN1Q16799 776 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 NEDD1Q8NHV4 660 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 OXCT2Q9BYC2 517 aaPredicted RBP4.96□□□□□ -1.62
VPS35-208ENST00000568612 BRD7Q9NPI1 651 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS35-208ENST00000568612 ENAMQ9NRM1 1142 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 KLK14Q9P0G3 267 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 MARK1Q9P0L2 795 aa4.96□□□□□ -1.62
VPS35-208ENST00000568612 C2CD2LO14523 706 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 BCRP11274 1271 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 MARSP56192 900 aaKnown RBP4.95□□□□□ -1.62
VPS35-208ENST00000568612 DGKZQ13574 1117 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 SAMD5Q5TGI4 173 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 POTEAQ6S8J7 498 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 ACDQ96AP0 544 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 STRN4Q9NRL3 753 aa4.95□□□□□ -1.62
VPS35-208ENST00000568612 NEURL1BA8MQ27 555 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 PPP1R15AO75807 674 aaPredicted RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 AMPD1P23109 780 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 FAM69CQ0P6D2 419 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 SFSWAPQ12872 951 aaKnown RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 NAA30Q147X3 362 aaPredicted RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 RAB44Q7Z6P3 723 aaPredicted RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 GOLGA6L1Q8N7Z2 621 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 GALNT6Q8NCL4 622 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 UBE2Q2Q8WVN8 375 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 C7orf43Q8WVR3 580 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 QTRT2Q9H974 415 aaKnown RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 GGA1Q9UJY5 639 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 GDF2Q9UK05 429 aaPredicted RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 ADAMTS8Q9UP79 889 aa4.94□□□□□ -1.62
VPS35-208ENST00000568612 DNMT3AQ9Y6K1 912 aaPredicted RBP4.94□□□□□ -1.62
VPS35-208ENST00000568612 ATP2B4P23634 1241 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 PCBP4P57723 403 aaKnown RBP4.93□□□□□ -1.62
VPS35-208ENST00000568612 TYRO3Q06418 890 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 LAMC2Q13753 1193 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 GRIN2CQ14957 1233 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 BTLAQ7Z6A9 289 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 CLP1Q92989 425 aaKnown RBP4.93□□□□□ -1.62
VPS35-208ENST00000568612 RRAGCQ9HB90 399 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 CXXC1Q9P0U4 656 aaPredicted RBP4.93□□□□□ -1.62
VPS35-208ENST00000568612 KCNH4Q9UQ05 1017 aa4.93□□□□□ -1.62
VPS35-208ENST00000568612 CARNS1A5YM72 827 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 TGFBR3LH3BV60 316 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 EFSO43281 561 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 ARHGEF15O94989 841 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 ARAFP10398 606 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 ADH6P28332 368 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 TBC1D8BQ0IIM8 1120 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 SPEM2Q0P670 501 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 NEUROD1Q13562 356 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 OCLNQ16625 522 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 C11orf91Q3C1V1 193 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 FAM182BQ5T319 152 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 EDARADDQ8WWZ3 215 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 IFT43Q96FT9 208 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 HCN2Q9UL51 889 aa4.92□□□□□ -1.62
VPS35-208ENST00000568612 OIP5O43482 229 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms