RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 DNAJC5GQ8N7S2 189 aa19.89■□□□□ 0.77
CLN3-236ENST00000568558 GLTPD2A6NH11 291 aa19.88■□□□□ 0.77
CLN3-236ENST00000568558 ST5P78524 1137 aa19.87■□□□□ 0.77
CLN3-236ENST00000568558 IFFO2Q5TF58 517 aa19.87■□□□□ 0.77
CLN3-236ENST00000568558 CLEC4GQ6UXB4 293 aa19.87■□□□□ 0.77
CLN3-236ENST00000568558 NUP98P52948 1817 aa19.87■□□□□ 0.77
CLN3-236ENST00000568558 NPHP1O15259 732 aa19.86■□□□□ 0.77
CLN3-236ENST00000568558 C21orf2O43822 256 aa19.86■□□□□ 0.77
CLN3-236ENST00000568558 ZNF219Q9P2Y4 722 aaPredicted RBP19.86■□□□□ 0.77
CLN3-236ENST00000568558 NBPF26B4DH59 902 aa19.85■□□□□ 0.77
CLN3-236ENST00000568558 TAF7Q15545 349 aaPredicted RBP19.85■□□□□ 0.77
CLN3-236ENST00000568558 STYK1Q6J9G0 422 aa19.85■□□□□ 0.77
CLN3-236ENST00000568558 NBPF10Q6P3W6 841 aaKnown RBP19.85■□□□□ 0.77
CLN3-236ENST00000568558 NBPF15Q8N660 670 aa19.85■□□□□ 0.77
CLN3-236ENST00000568558 ZNF652Q9Y2D9 606 aa19.85■□□□□ 0.77
CLN3-236ENST00000568558 SRGNP10124 158 aa19.84■□□□□ 0.77
CLN3-236ENST00000568558 VEGFAP15692 232 aaPredicted RBP19.84■□□□□ 0.77
CLN3-236ENST00000568558 SMC1BQ8NDV3 1235 aa19.84■□□□□ 0.77
CLN3-236ENST00000568558 CNKSR1Q969H4 720 aa19.84■□□□□ 0.77
CLN3-236ENST00000568558 LTBP3Q9NS15 1303 aa19.83■□□□□ 0.77
CLN3-236ENST00000568558 RGL2O15211 777 aa19.83■□□□□ 0.77
CLN3-236ENST00000568558 HTRA3P83110 453 aa19.83■□□□□ 0.77
CLN3-236ENST00000568558 MASTLQ96GX5 879 aa19.83■□□□□ 0.77
CLN3-236ENST00000568558 NEFMP07197 916 aa19.82■□□□□ 0.76
CLN3-236ENST00000568558 PRPF40BQ6NWY9 871 aaKnown RBP19.82■□□□□ 0.76
CLN3-236ENST00000568558 NBPF5PQ86XG9 351 aaPredicted RBP19.82■□□□□ 0.76
CLN3-236ENST00000568558 MIS18AQ9NYP9 233 aa19.82■□□□□ 0.76
CLN3-236ENST00000568558 TAOK3Q9H2K8 898 aa19.81■□□□□ 0.76
CLN3-236ENST00000568558 NIP7Q9Y221 180 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-236ENST00000568558 POTECB2RU33 542 aa19.8■□□□□ 0.76
CLN3-236ENST00000568558 ERFEQ4G0M1 354 aa19.8■□□□□ 0.76
CLN3-236ENST00000568558 SOGA3Q5TF21 947 aa19.8■□□□□ 0.76
CLN3-236ENST00000568558 KLRG1Q96E93 195 aa19.8■□□□□ 0.76
CLN3-236ENST00000568558 PLEKHF1Q96S99 279 aa19.8■□□□□ 0.76
CLN3-236ENST00000568558 DPY19L2Q6NUT2 758 aa19.79■□□□□ 0.76
CLN3-236ENST00000568558 KLRG2A4D1S0 409 aaPredicted RBP19.78■□□□□ 0.76
CLN3-236ENST00000568558 NFE2L2Q16236 605 aa19.78■□□□□ 0.76
CLN3-236ENST00000568558 HLFQ16534 295 aa19.78■□□□□ 0.76
CLN3-236ENST00000568558 TPTE2Q6XPS3 522 aa19.78■□□□□ 0.76
CLN3-236ENST00000568558 PNISRQ8TF01 805 aaKnown RBP19.78■□□□□ 0.76
CLN3-236ENST00000568558 SCN4AP35499 1836 aa19.78■□□□□ 0.76
CLN3-236ENST00000568558 NPR1P16066 1061 aa19.77■□□□□ 0.76
CLN3-236ENST00000568558 JMYQ8N9B5 988 aa19.77■□□□□ 0.76
CLN3-236ENST00000568558 C7orf43Q8WVR3 580 aa19.77■□□□□ 0.76
CLN3-236ENST00000568558 EIF4A1P60842 406 aaKnown RBP19.76■□□□□ 0.75
CLN3-236ENST00000568558 FAM177BA6PVY3 158 aa19.75■□□□□ 0.75
CLN3-236ENST00000568558 CCDC93Q567U6 631 aa19.75■□□□□ 0.75
CLN3-236ENST00000568558 THUMPD2Q9BTF0 503 aaKnown RBP19.75■□□□□ 0.75
CLN3-236ENST00000568558 MAPK8IP3Q9UPT6 1336 aa19.75■□□□□ 0.75
CLN3-236ENST00000568558 PNNQ9H307 717 aaKnown RBP19.74■□□□□ 0.75
CLN3-236ENST00000568558 ERVV-1B6SEH8 477 aa19.73■□□□□ 0.75
CLN3-236ENST00000568558 NGEFQ8N5V2 710 aa19.73■□□□□ 0.75
CLN3-236ENST00000568558 PCNTO95613 3336 aa19.73■□□□□ 0.75
CLN3-236ENST00000568558 MAP3K15Q6ZN16 1313 aa19.73■□□□□ 0.75
CLN3-236ENST00000568558 ABCC12Q96J65 1359 aa19.72■□□□□ 0.75
CLN3-236ENST00000568558 DDNO94850 711 aaPredicted RBP19.72■□□□□ 0.75
CLN3-236ENST00000568558 RRP7AQ9Y3A4 280 aaKnown RBP19.72■□□□□ 0.75
CLN3-236ENST00000568558 ANKRD36CQ5JPF3 1778 aa19.72■□□□□ 0.75
CLN3-236ENST00000568558 RIC1Q4ADV7 1423 aa19.71■□□□□ 0.75
CLN3-236ENST00000568558 GTF2E1P29083 439 aaPredicted RBP19.71■□□□□ 0.75
CLN3-236ENST00000568558 FKBP4Q02790 459 aaKnown RBP eCLIP19.71■□□□□ 0.75
CLN3-236ENST00000568558 TTLL7Q6ZT98 887 aa19.71■□□□□ 0.75
CLN3-236ENST00000568558 NYXQ9GZU5 481 aa19.71■□□□□ 0.75
CLN3-236ENST00000568558 MYL6BP14649 208 aa19.7■□□□□ 0.74
CLN3-236ENST00000568558 OLFM4Q6UX06 510 aa19.7■□□□□ 0.74
CLN3-236ENST00000568558 KIF6Q6ZMV9 814 aa19.7■□□□□ 0.74
CLN3-236ENST00000568558 IBTKQ9P2D0 1353 aaPredicted RBP19.7■□□□□ 0.74
CLN3-236ENST00000568558 SNED1Q8TER0 1413 aa19.69■□□□□ 0.74
CLN3-236ENST00000568558 ALDH1B1P30837 517 aa19.69■□□□□ 0.74
CLN3-236ENST00000568558 CRY2Q49AN0 593 aa19.69■□□□□ 0.74
CLN3-236ENST00000568558 NUTM1Q86Y26 1132 aa19.69■□□□□ 0.74
CLN3-236ENST00000568558 ERBB4Q15303 1308 aa19.69■□□□□ 0.74
CLN3-236ENST00000568558 CHADLQ6NUI6 762 aa19.68■□□□□ 0.74
CLN3-236ENST00000568558 RTKN2Q8IZC4 609 aa19.68■□□□□ 0.74
CLN3-236ENST00000568558 ZBTB3Q9H5J0 574 aa19.68■□□□□ 0.74
CLN3-236ENST00000568558 ZNF277Q9NRM2 450 aaPredicted RBP19.68■□□□□ 0.74
CLN3-236ENST00000568558 UBN2Q6ZU65 1347 aa19.68■□□□□ 0.74
CLN3-236ENST00000568558 LAMB2P55268 1798 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 ADAMTSL1Q8N6G6 1762 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 POTEIP0CG38 1075 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 POTEJP0CG39 1038 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 GPTP24298 496 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 L3MBTL3Q96JM7 780 aaPredicted RBP19.67■□□□□ 0.74
CLN3-236ENST00000568558 TSPYL4Q9UJ04 414 aa19.67■□□□□ 0.74
CLN3-236ENST00000568558 IQCA1LA6NCM1 817 aa19.66■□□□□ 0.74
CLN3-236ENST00000568558 RALBP1Q15311 655 aa19.66■□□□□ 0.74
CLN3-236ENST00000568558 ZNF541Q9H0D2 1346 aa19.66■□□□□ 0.74
CLN3-236ENST00000568558 IARSP41252 1262 aaKnown RBP19.65■□□□□ 0.74
CLN3-236ENST00000568558 RIPK4P57078 832 aa19.65■□□□□ 0.74
CLN3-236ENST00000568558 GIGYF2Q6Y7W6 1299 aaKnown RBP19.65■□□□□ 0.74
CLN3-236ENST00000568558 ZNF34Q8IZ26 560 aa19.65■□□□□ 0.74
CLN3-236ENST00000568558 SUSD4Q5VX71 490 aa19.64■□□□□ 0.73
CLN3-236ENST00000568558 LRP10Q7Z4F1 713 aa19.64■□□□□ 0.73
CLN3-236ENST00000568558 SYNE4Q8N205 404 aa19.64■□□□□ 0.73
CLN3-236ENST00000568558 COL4A5P29400 1685 aa19.63■□□□□ 0.73
CLN3-236ENST00000568558 NTSR2O95665 410 aa19.63■□□□□ 0.73
CLN3-236ENST00000568558 HOXA10P31260 410 aaPredicted RBP19.63■□□□□ 0.73
CLN3-236ENST00000568558 PDIA6Q15084 440 aa19.63■□□□□ 0.73
CLN3-236ENST00000568558 RPGRQ92834 1020 aaKnown RBP19.63■□□□□ 0.73
CLN3-236ENST00000568558 PSMD1Q99460 953 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms