RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DEFB115Q30KQ5 88 aa18.43■□□□□ 0.54
CLN3-235ENST00000568497 MCM10Q7L590 875 aa18.43■□□□□ 0.54
CLN3-235ENST00000568497 IL17REQ8NFR9 667 aa18.43■□□□□ 0.54
CLN3-235ENST00000568497 THUMPD2Q9BTF0 503 aaKnown RBP18.43■□□□□ 0.54
CLN3-235ENST00000568497 PLEKHF1Q96S99 279 aa18.42■□□□□ 0.54
CLN3-235ENST00000568497 BEGAINQ9BUH8 593 aa18.42■□□□□ 0.54
CLN3-235ENST00000568497 TAF1DQ9H5J8 278 aaPredicted RBP18.42■□□□□ 0.54
CLN3-235ENST00000568497 BCL2L12Q9HB09 334 aa18.42■□□□□ 0.54
CLN3-235ENST00000568497 ABT1Q9ULW3 272 aaKnown RBP18.42■□□□□ 0.54
CLN3-235ENST00000568497 PDZRN3Q9UPQ7 1066 aa18.42■□□□□ 0.54
CLN3-235ENST00000568497 WDR33Q9C0J8 1336 aaKnown RBP18.42■□□□□ 0.54
CLN3-235ENST00000568497 SCN4AP35499 1836 aa18.42■□□□□ 0.54
CLN3-235ENST00000568497 SCN11AQ9UI33 1791 aa18.41■□□□□ 0.54
CLN3-235ENST00000568497 RASSF10A6NK89 507 aa18.41■□□□□ 0.54
CLN3-235ENST00000568497 PAXIP1Q6ZW49 1069 aaPredicted RBP18.41■□□□□ 0.54
CLN3-235ENST00000568497 ADAMTS8Q9UP79 889 aa18.41■□□□□ 0.54
CLN3-235ENST00000568497 LTBP3Q9NS15 1303 aa18.41■□□□□ 0.54
CLN3-235ENST00000568497 CACNA1SQ13698 1873 aa18.4■□□□□ 0.54
CLN3-235ENST00000568497 ANP32CO43423 234 aa18.4■□□□□ 0.54
CLN3-235ENST00000568497 ITGBL1O95965 494 aaPredicted RBP18.4■□□□□ 0.54
CLN3-235ENST00000568497 RGS19P49795 217 aa18.4■□□□□ 0.54
CLN3-235ENST00000568497 ZBTB1Q9Y2K1 713 aa18.4■□□□□ 0.54
CLN3-235ENST00000568497 KCNQ3O43525 872 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 CYP19A1P11511 503 aaPredicted RBP18.39■□□□□ 0.53
CLN3-235ENST00000568497 PDE6BP35913 854 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 GRM1Q13255 1194 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 CCDC24Q8N4L8 307 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 GAS2L2Q8NHY3 880 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 COL11A2P13942 1736 aaPredicted RBP18.39■□□□□ 0.53
CLN3-235ENST00000568497 ANKRD31Q8N7Z5 1873 aa18.39■□□□□ 0.53
CLN3-235ENST00000568497 GNAT3A8MTJ3 354 aa18.38■□□□□ 0.53
CLN3-235ENST00000568497 NPHP1O15259 732 aa18.38■□□□□ 0.53
CLN3-235ENST00000568497 NEUROD2Q15784 382 aa18.38■□□□□ 0.53
CLN3-235ENST00000568497 L3MBTL3Q96JM7 780 aaPredicted RBP18.38■□□□□ 0.53
CLN3-235ENST00000568497 SLC52A2Q9HAB3 445 aa18.38■□□□□ 0.53
CLN3-235ENST00000568497 WDR43Q15061 677 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-235ENST00000568497 MIS18AQ9NYP9 233 aa18.37■□□□□ 0.53
CLN3-235ENST00000568497 HACL1Q9UJ83 578 aa18.37■□□□□ 0.53
CLN3-235ENST00000568497 CANXP27824 592 aaKnown RBP18.36■□□□□ 0.53
CLN3-235ENST00000568497 MAP1SQ66K74 1059 aaPredicted RBP18.36■□□□□ 0.53
CLN3-235ENST00000568497 DLG5Q8TDM6 1919 aa18.36■□□□□ 0.53
CLN3-235ENST00000568497 BRIP1Q9BX63 1249 aa18.36■□□□□ 0.53
CLN3-235ENST00000568497 EPHX2P34913 555 aa18.35■□□□□ 0.53
CLN3-235ENST00000568497 SOGA3Q5TF21 947 aa18.35■□□□□ 0.53
CLN3-235ENST00000568497 CNTROBQ8N137 903 aa18.35■□□□□ 0.53
CLN3-235ENST00000568497 TSKSQ9UJT2 592 aa18.35■□□□□ 0.53
CLN3-235ENST00000568497 NFE2L2Q16236 605 aa18.34■□□□□ 0.53
CLN3-235ENST00000568497 PRPF40BQ6NWY9 871 aaKnown RBP18.34■□□□□ 0.53
CLN3-235ENST00000568497 CNKSR1Q969H4 720 aa18.34■□□□□ 0.53
CLN3-235ENST00000568497 MRS2Q9HD23 443 aa18.34■□□□□ 0.53
CLN3-235ENST00000568497 SLX4Q8IY92 1834 aa18.34■□□□□ 0.53
CLN3-235ENST00000568497 RNF123Q5XPI4 1314 aa18.33■□□□□ 0.53
CLN3-235ENST00000568497 ZNF541Q9H0D2 1346 aa18.33■□□□□ 0.53
CLN3-235ENST00000568497 MAPK8IP3Q9UPT6 1336 aa18.33■□□□□ 0.53
CLN3-235ENST00000568497 TBC1D9BQ66K14 1250 aa18.33■□□□□ 0.52
CLN3-235ENST00000568497 PRR5LQ6MZQ0 368 aa18.33■□□□□ 0.52
CLN3-235ENST00000568497 PNMA8AQ86V59 439 aaPredicted RBP18.33■□□□□ 0.52
CLN3-235ENST00000568497 ZNF330Q9Y3S2 320 aaPredicted RBP18.33■□□□□ 0.52
CLN3-235ENST00000568497 ECE1P42892 770 aa18.32■□□□□ 0.52
CLN3-235ENST00000568497 VSIG10Q8N0Z9 540 aa18.32■□□□□ 0.52
CLN3-235ENST00000568497 CAPNS2Q96L46 248 aa18.32■□□□□ 0.52
CLN3-235ENST00000568497 ADAMTSL1Q8N6G6 1762 aa18.32■□□□□ 0.52
CLN3-235ENST00000568497 MRC1P22897 1456 aa18.32■□□□□ 0.52
CLN3-235ENST00000568497 TEFQ10587 303 aa18.31■□□□□ 0.52
CLN3-235ENST00000568497 GPR101Q96P66 508 aaPredicted RBP18.31■□□□□ 0.52
CLN3-235ENST00000568497 THSD7BQ9C0I4 1608 aa18.31■□□□□ 0.52
CLN3-235ENST00000568497 A0A087WZG4 1122 aa18.3■□□□□ 0.52
CLN3-235ENST00000568497 PRAMEF22A3QJZ6 481 aa18.3■□□□□ 0.52
CLN3-235ENST00000568497 TMPOP42166 694 aaKnown RBP18.3■□□□□ 0.52
CLN3-235ENST00000568497 RIPK4P57078 832 aa18.3■□□□□ 0.52
CLN3-235ENST00000568497 CNBD1Q8NA66 436 aa18.3■□□□□ 0.52
CLN3-235ENST00000568497 RTF1Q92541 710 aaKnown RBP18.3■□□□□ 0.52
CLN3-235ENST00000568497 MCOLN1Q9GZU1 580 aa18.3■□□□□ 0.52
CLN3-235ENST00000568497 PDE4DIPQ5VU43 2346 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 EIF5P55010 431 aaKnown RBP18.29■□□□□ 0.52
CLN3-235ENST00000568497 ST5P78524 1137 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 CCDC93Q567U6 631 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 STYK1Q6J9G0 422 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 CYP4F22Q6NT55 531 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 DDX21Q9NR30 783 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-235ENST00000568497 SIPA1L3O60292 1781 aaPredicted RBP18.29■□□□□ 0.52
CLN3-235ENST00000568497 ARFGEF2Q9Y6D5 1785 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 CEMIPQ8WUJ3 1361 aa18.29■□□□□ 0.52
CLN3-235ENST00000568497 SCN7AQ01118 1682 aa18.28■□□□□ 0.52
CLN3-235ENST00000568497 APAF1O14727 1248 aa18.28■□□□□ 0.52
CLN3-235ENST00000568497 NEFMP07197 916 aa18.28■□□□□ 0.52
CLN3-235ENST00000568497 MASTLQ96GX5 879 aa18.28■□□□□ 0.52
CLN3-235ENST00000568497 ZNF496Q96IT1 587 aaPredicted RBP18.28■□□□□ 0.52
CLN3-235ENST00000568497 ZNF277Q9NRM2 450 aaPredicted RBP18.28■□□□□ 0.52
CLN3-235ENST00000568497 SALL2Q9Y467 1007 aaPredicted RBP18.28■□□□□ 0.52
CLN3-235ENST00000568497 BTBD11A6QL63 1104 aa18.27■□□□□ 0.52
CLN3-235ENST00000568497 PIP4K2AP48426 406 aaPredicted RBP18.27■□□□□ 0.52
CLN3-235ENST00000568497 PNISRQ8TF01 805 aaKnown RBP18.27■□□□□ 0.52
CLN3-235ENST00000568497 RUNDC1Q96C34 613 aa18.27■□□□□ 0.52
CLN3-235ENST00000568497 SRGNP10124 158 aa18.26■□□□□ 0.51
CLN3-235ENST00000568497 FAM9BQ8IZU0 186 aa18.26■□□□□ 0.51
CLN3-235ENST00000568497 SETDB2Q96T68 719 aa18.26■□□□□ 0.51
CLN3-235ENST00000568497 TBC1D2BQ9UPU7 963 aa18.26■□□□□ 0.51
CLN3-235ENST00000568497 STARD3NLO95772 234 aa18.25■□□□□ 0.51
CLN3-235ENST00000568497 FKBP4Q02790 459 aaKnown RBP eCLIP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms