RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 OXLD1Q5BKU9 147 aa8.67□□□□□ -1.02
VPS39-209ENST00000568029 SIX5Q8N196 739 aa8.67□□□□□ -1.02
VPS39-209ENST00000568029 SCAF11Q99590 1463 aaKnown RBP8.67□□□□□ -1.02
VPS39-209ENST00000568029 ZNF644Q9H582 1327 aaPredicted RBP8.67□□□□□ -1.02
VPS39-209ENST00000568029 DNAAF2Q9NVR5 837 aaKnown RBP8.67□□□□□ -1.02
VPS39-209ENST00000568029 MBD5Q9P267 1494 aa8.67□□□□□ -1.02
VPS39-209ENST00000568029 EMILIN1Q9Y6C2 1016 aa8.67□□□□□ -1.02
VPS39-209ENST00000568029 MROH1Q8NDA8 1641 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 ABCC3O15438 1527 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 ERVK-7P63135 1459 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 CCDC18Q5T9S5 1454 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 RGS12O14924 1447 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 TMEM94Q12767 1356 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 CRTC2Q53ET0 693 aaPredicted RBP8.66□□□□□ -1.02
VPS39-209ENST00000568029 CC2D2BQ6DHV5 1058 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 OGFOD1Q8N543 542 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 TOR4AQ9NXH8 423 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 PCDHGA11Q9Y5H2 935 aa8.66□□□□□ -1.02
VPS39-209ENST00000568029 KIAA1107Q9UPP5 1409 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 LTKP29376 864 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 GTF2IP78347 998 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 CLDN10P78369 228 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 FOXC1Q12948 553 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 CDCA8Q53HL2 280 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 PPP1R26Q5T8A7 1209 aaPredicted RBP8.65□□□□□ -1.02
VPS39-209ENST00000568029 PGPEP1Q9NXJ5 209 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 ZMIZ1Q9ULJ6 1067 aa8.65□□□□□ -1.02
VPS39-209ENST00000568029 NOVA2Q9UNW9 492 aaKnown RBP8.65□□□□□ -1.02
VPS39-209ENST00000568029 SHPRHQ149N8 1683 aa8.65□□□□□ -1.03
VPS39-209ENST00000568029 PIK3C2BO00750 1634 aa8.65□□□□□ -1.03
VPS39-209ENST00000568029 ARHGAP23Q9P227 1491 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 CASKIN1Q8WXD9 1431 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 TMEM88BA6NKF7 163 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 ZBTB7BO15156 539 aaPredicted RBP8.64□□□□□ -1.03
VPS39-209ENST00000568029 ALDH1A1P00352 501 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 MYT1Q01538 1121 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 ANKMY2Q8IV38 441 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 THEMISQ8N1K5 641 aaPredicted RBP8.64□□□□□ -1.03
VPS39-209ENST00000568029 WASF2Q9Y6W5 498 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 EP400Q96L91 3159 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 CFAP65Q6ZU64 1925 aaKnown RBP8.64□□□□□ -1.03
VPS39-209ENST00000568029 SLIT1O75093 1534 aa8.64□□□□□ -1.03
VPS39-209ENST00000568029 DHX29Q7Z478 1369 aaKnown RBP8.63□□□□□ -1.03
VPS39-209ENST00000568029 KIF3BO15066 747 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 LILRA1O75019 489 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 DKK1O94907 266 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 NR3C2P08235 984 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 RAB15P59190 212 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 NNTQ13423 1086 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 CYP4X1Q8N118 509 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 ZNF784Q8NCA9 323 aaPredicted RBP8.63□□□□□ -1.03
VPS39-209ENST00000568029 DIP2AQ14689 1571 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 NWD1Q149M9 1564 aa8.63□□□□□ -1.03
VPS39-209ENST00000568029 KDM5AP29375 1690 aaKnown RBP8.62□□□□□ -1.03
VPS39-209ENST00000568029 JCADQ9P266 1359 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 MAST1Q9Y2H9 1570 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 M0R2N6 131 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 WASLO00401 505 aaPredicted RBP8.62□□□□□ -1.03
VPS39-209ENST00000568029 SCTRP47872 440 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 SWI5Q1ZZU3 235 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 TRIM67Q6ZTA4 783 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 FAM200AQ8TCP9 573 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 OSBPL3Q9H4L5 887 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 PLEKHH2Q8IVE3 1493 aa8.62□□□□□ -1.03
VPS39-209ENST00000568029 WASHC2CQ9Y4E1 1318 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 PRDM15P57071 1507 aaPredicted RBP8.61□□□□□ -1.03
VPS39-209ENST00000568029 TTC24A2A3L6 582 aaPredicted RBP8.61□□□□□ -1.03
VPS39-209ENST00000568029 TMEM164Q5U3C3 297 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 CYP2U1Q7Z449 544 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 KCTD17Q8N5Z5 321 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 KLF16Q9BXK1 252 aaPredicted RBP8.61□□□□□ -1.03
VPS39-209ENST00000568029 TMPRSS4Q9NRS4 437 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 RBM19Q9Y4C8 960 aaKnown RBP8.61□□□□□ -1.03
VPS39-209ENST00000568029 LRRC9Q6ZRR7 1453 aa8.61□□□□□ -1.03
VPS39-209ENST00000568029 FYCO1Q9BQS8 1478 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 SEC13P55735 322 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 DPYDQ12882 1025 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 CCDC102BQ68D86 513 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 STK32AQ8WU08 396 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 KIAA1024Q9UPX6 916 aa8.6□□□□□ -1.03
VPS39-209ENST00000568029 TET3O43151 1660 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 CDK12Q9NYV4 1490 aaPredicted RBP8.59□□□□□ -1.03
VPS39-209ENST00000568029 PATL2C9JE40 543 aaKnown RBP8.59□□□□□ -1.03
VPS39-209ENST00000568029 BRD1O95696 1058 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 GNRH1P01148 92 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 SMPD1P17405 629 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 B4GALNT3Q6L9W6 998 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 TPCN2Q8NHX9 752 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 CLP1Q92989 425 aaKnown RBP8.59□□□□□ -1.03
VPS39-209ENST00000568029 ZNF594Q96JF6 807 aaPredicted RBP8.59□□□□□ -1.03
VPS39-209ENST00000568029 CYLDQ9NQC7 956 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 CFDP1Q9UEE9 299 aaPredicted RBP8.59□□□□□ -1.03
VPS39-209ENST00000568029 RTEL1-TNFRSF6BF6WH68 1400 aa8.59□□□□□ -1.03
VPS39-209ENST00000568029 AHDC1Q5TGY3 1603 aaPredicted RBP8.58□□□□□ -1.04
VPS39-209ENST00000568029 RRBP1Q9P2E9 1410 aaKnown RBP8.58□□□□□ -1.04
VPS39-209ENST00000568029 J3QL48 77 aa8.58□□□□□ -1.04
VPS39-209ENST00000568029 Q6ZVU0 165 aa8.58□□□□□ -1.04
VPS39-209ENST00000568029 CCNB3Q8WWL7 1395 aa8.58□□□□□ -1.04
VPS39-209ENST00000568029 CAMSAP2Q08AD1 1489 aa8.57□□□□□ -1.04
VPS39-209ENST00000568029 CCDC141Q6ZP82 1450 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms