RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 CNTROBQ8N137 903 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 CFAP44Q96MT7 982 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 SLC52A2Q9HAB3 445 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 NPC1L1Q9UHC9 1359 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 SLX4Q8IY92 1834 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 ADAMTSL1Q8N6G6 1762 aa15.19■□□□□ 0.02
CLN3-226ENST00000567160 THSD7BQ9C0I4 1608 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 EPHX2P34913 555 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 STYK1Q6J9G0 422 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 PRPF40BQ6NWY9 871 aaKnown RBP15.18■□□□□ 0.02
CLN3-226ENST00000567160 MORC1Q86VD1 984 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 VSIG10Q8N0Z9 540 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 PDE4DIPQ5VU43 2346 aa15.18■□□□□ 0.02
CLN3-226ENST00000567160 AKAP4Q5JQC9 854 aa15.17■□□□□ 0.02
CLN3-226ENST00000567160 PRR5LQ6MZQ0 368 aa15.17■□□□□ 0.02
CLN3-226ENST00000567160 PAXIP1Q6ZW49 1069 aaPredicted RBP15.17■□□□□ 0.02
CLN3-226ENST00000567160 STARD3NLO95772 234 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 CANXP27824 592 aaKnown RBP15.16■□□□□ 0.02
CLN3-226ENST00000567160 ST5P78524 1137 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 CCDC93Q567U6 631 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 TBC1D9BQ66K14 1250 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 MAP1SQ66K74 1059 aaPredicted RBP15.16■□□□□ 0.02
CLN3-226ENST00000567160 MASTLQ96GX5 879 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 SCN7AQ01118 1682 aa15.16■□□□□ 0.02
CLN3-226ENST00000567160 MRC1P22897 1456 aa15.15■□□□□ 0.02
CLN3-226ENST00000567160 ANP32CO43423 234 aa15.15■□□□□ 0.02
CLN3-226ENST00000567160 AEBP1Q8IUX7 1158 aa15.15■□□□□ 0.02
CLN3-226ENST00000567160 CNBD1Q8NA66 436 aa15.15■□□□□ 0.02
CLN3-226ENST00000567160 CAPNS2Q96L46 248 aa15.15■□□□□ 0.02
CLN3-226ENST00000567160 SRGNP10124 158 aa15.14■□□□□ 0.01
CLN3-226ENST00000567160 EIF5P55010 431 aaKnown RBP15.14■□□□□ 0.01
CLN3-226ENST00000567160 SLC39A6Q13433 755 aa15.14■□□□□ 0.01
CLN3-226ENST00000567160 SULT6B1Q6IMI4 303 aa15.14■□□□□ 0.01
CLN3-226ENST00000567160 NPM2Q86SE8 214 aaKnown RBP15.14■□□□□ 0.01
CLN3-226ENST00000567160 GPR101Q96P66 508 aaPredicted RBP15.14■□□□□ 0.01
CLN3-226ENST00000567160 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
CLN3-226ENST00000567160 DDX21Q9NR30 783 aaKnown RBP eCLIP15.14■□□□□ 0.01
CLN3-226ENST00000567160 ZNF541Q9H0D2 1346 aa15.14■□□□□ 0.01
CLN3-226ENST00000567160 CA12O43570 354 aa15.13■□□□□ 0.01
CLN3-226ENST00000567160 FKBP4Q02790 459 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLN3-226ENST00000567160 CCDC24Q8N4L8 307 aa15.13■□□□□ 0.01
CLN3-226ENST00000567160 PRKRIP1Q9H875 184 aaPredicted RBP15.13■□□□□ 0.01
CLN3-226ENST00000567160 RNF123Q5XPI4 1314 aa15.13■□□□□ 0.01
CLN3-226ENST00000567160 TRPM7Q96QT4 1865 aa15.12■□□□□ 0.01
CLN3-226ENST00000567160 GRM1Q13255 1194 aa15.12■□□□□ 0.01
CLN3-226ENST00000567160 MCOLN1Q9GZU1 580 aa15.12■□□□□ 0.01
CLN3-226ENST00000567160 UBR2Q8IWV8 1755 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 MAP2K2P36507 400 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 RALBP1Q15311 655 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 RTKN2Q8IZC4 609 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 TTC5Q8N0Z6 440 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 GPC2Q8N158 579 aa15.11■□□□□ 0.01
CLN3-226ENST00000567160 ZNF277Q9NRM2 450 aaPredicted RBP15.11■□□□□ 0.01
CLN3-226ENST00000567160 RNMTO43148 476 aaKnown RBP15.1■□□□□ 0.01
CLN3-226ENST00000567160 LMOD1P29536 600 aaPredicted RBP15.1■□□□□ 0.01
CLN3-226ENST00000567160 CYP4F22Q6NT55 531 aa15.1■□□□□ 0.01
CLN3-226ENST00000567160 LGR6Q9HBX8 967 aa15.1■□□□□ 0.01
CLN3-226ENST00000567160 ZNF330Q9Y3S2 320 aaPredicted RBP15.1■□□□□ 0.01
CLN3-226ENST00000567160 CASP8AP2Q9UKL3 1982 aa15.09■□□□□ 0.01
CLN3-226ENST00000567160 PPP2R1AP30153 589 aa15.09■□□□□ 0.01
CLN3-226ENST00000567160 C7orf43Q8WVR3 580 aa15.09■□□□□ 0.01
CLN3-226ENST00000567160 TEX13AQ9BXU3 409 aaPredicted RBP15.09■□□□□ 0.01
CLN3-226ENST00000567160 TBC1D2BQ9UPU7 963 aa15.09■□□□□ 0.01
CLN3-226ENST00000567160 MYBBP1AQ9BQG0 1328 aaKnown RBP15.09■□□□□ 0.01
CLN3-226ENST00000567160 TNRC18O15417 2968 aaPredicted RBP15.09■□□□□ 0.01
CLN3-226ENST00000567160 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
CLN3-226ENST00000567160 FZD9O00144 591 aa15.08■□□□□ 0
CLN3-226ENST00000567160 NPR1P16066 1061 aa15.08■□□□□ 0
CLN3-226ENST00000567160 IL6STP40189 918 aaPredicted RBP15.08■□□□□ 0
CLN3-226ENST00000567160 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
CLN3-226ENST00000567160 JDP2Q8WYK2 163 aa15.08■□□□□ 0
CLN3-226ENST00000567160 TSKSQ9UJT2 592 aa15.08■□□□□ 0
CLN3-226ENST00000567160 DGKZQ13574 1117 aa15.07■□□□□ 0
CLN3-226ENST00000567160 MIER1Q8N108 512 aa15.07■□□□□ 0
CLN3-226ENST00000567160 TLL2Q9Y6L7 1015 aa15.07■□□□□ 0
CLN3-226ENST00000567160 EIF6P56537 245 aaKnown RBP15.06■□□□□ 0
CLN3-226ENST00000567160 BCORQ6W2J9 1755 aa15.06■□□□□ 0
CLN3-226ENST00000567160 BRPF1P55201 1214 aaPredicted RBP15.05■□□□□ -0
CLN3-226ENST00000567160 NBPF5PQ86XG9 351 aaPredicted RBP15.05■□□□□ -0
CLN3-226ENST00000567160 AOC2O75106 756 aa15.04■□□□□ -0
CLN3-226ENST00000567160 CAMTA2O94983 1202 aa15.04■□□□□ -0
CLN3-226ENST00000567160 IL13P35225 146 aa15.04■□□□□ -0
CLN3-226ENST00000567160 USP50Q70EL3 339 aaPredicted RBP15.04■□□□□ -0
CLN3-226ENST00000567160 SYNE4Q8N205 404 aa15.04■□□□□ -0
CLN3-226ENST00000567160 GJA3Q9Y6H8 435 aa15.04■□□□□ -0
CLN3-226ENST00000567160 HEG1Q9ULI3 1381 aa15.03■□□□□ -0
CLN3-226ENST00000567160 ALDH1B1P30837 517 aa15.03■□□□□ -0
CLN3-226ENST00000567160 CST9Q5W186 159 aa15.03■□□□□ -0
CLN3-226ENST00000567160 ZNF652Q9Y2D9 606 aa15.03■□□□□ -0
CLN3-226ENST00000567160 PRPF38BQ5VTL8 546 aaKnown RBP15.02■□□□□ -0
CLN3-226ENST00000567160 CLEC4GQ6UXB4 293 aa15.02■□□□□ -0
CLN3-226ENST00000567160 DZIP3Q86Y13 1208 aaKnown RBP15.02■□□□□ -0
CLN3-226ENST00000567160 HHIPL1Q96JK4 782 aa15.02■□□□□ -0
CLN3-226ENST00000567160 PSMD1Q99460 953 aa15.02■□□□□ -0
CLN3-226ENST00000567160 KLRG2A4D1S0 409 aaPredicted RBP15.01□□□□□ -0.01
CLN3-226ENST00000567160 TRAF5O00463 557 aa15.01□□□□□ -0.01
CLN3-226ENST00000567160 FMR1Q06787 632 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-226ENST00000567160 ZNF790Q6PG37 636 aa15.01□□□□□ -0.01
CLN3-226ENST00000567160 TPTE2Q6XPS3 522 aa15.01□□□□□ -0.01
CLN3-226ENST00000567160 SAPCD2Q86UD0 394 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms