RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 NPHP1O15259 732 aa22.93■■□□□ 1.26
CDH3-205ENST00000566808 TTC5Q8N0Z6 440 aa22.93■■□□□ 1.26
CDH3-205ENST00000566808 MASTLQ96GX5 879 aa22.93■■□□□ 1.26
CDH3-205ENST00000566808 ZNF541Q9H0D2 1346 aa22.92■■□□□ 1.26
CDH3-205ENST00000566808 MLLT1Q03111 559 aaPredicted RBP22.92■■□□□ 1.26
CDH3-205ENST00000566808 DEFB115Q30KQ5 88 aa22.92■■□□□ 1.26
CDH3-205ENST00000566808 CCDC93Q567U6 631 aa22.92■■□□□ 1.26
CDH3-205ENST00000566808 WDR33Q9C0J8 1336 aaKnown RBP22.91■■□□□ 1.26
CDH3-205ENST00000566808 EPHX2P34913 555 aa22.91■■□□□ 1.26
CDH3-205ENST00000566808 PNMA8AQ86V59 439 aaPredicted RBP22.91■■□□□ 1.26
CDH3-205ENST00000566808 SETDB2Q96T68 719 aa22.91■■□□□ 1.26
CDH3-205ENST00000566808 PANK3Q9H999 370 aa22.91■■□□□ 1.26
CDH3-205ENST00000566808 HEG1Q9ULI3 1381 aa22.9■■□□□ 1.26
CDH3-205ENST00000566808 PDE4DIPQ5VU43 2346 aa22.9■■□□□ 1.26
CDH3-205ENST00000566808 IL6STP40189 918 aaPredicted RBP22.9■■□□□ 1.26
CDH3-205ENST00000566808 TBC1D2BQ9UPU7 963 aa22.9■■□□□ 1.26
CDH3-205ENST00000566808 CLEC11AQ9Y240 323 aa22.9■■□□□ 1.26
CDH3-205ENST00000566808 ZNF330Q9Y3S2 320 aaPredicted RBP22.9■■□□□ 1.26
CDH3-205ENST00000566808 TRPM7Q96QT4 1865 aa22.9■■□□□ 1.26
CDH3-205ENST00000566808 TEX13AQ9BXU3 409 aaPredicted RBP22.89■■□□□ 1.25
CDH3-205ENST00000566808 RGS19P49795 217 aa22.88■■□□□ 1.25
CDH3-205ENST00000566808 FKBP4Q02790 459 aaKnown RBP eCLIP22.88■■□□□ 1.25
CDH3-205ENST00000566808 CNTROBQ8N137 903 aa22.88■■□□□ 1.25
CDH3-205ENST00000566808 C7orf43Q8WVR3 580 aa22.88■■□□□ 1.25
CDH3-205ENST00000566808 ABT1Q9ULW3 272 aaKnown RBP22.88■■□□□ 1.25
CDH3-205ENST00000566808 MAP1SQ66K74 1059 aaPredicted RBP22.87■■□□□ 1.25
CDH3-205ENST00000566808 ZNF496Q96IT1 587 aaPredicted RBP22.87■■□□□ 1.25
CDH3-205ENST00000566808 TNRC18O15417 2968 aaPredicted RBP22.87■■□□□ 1.25
CDH3-205ENST00000566808 RNF123Q5XPI4 1314 aa22.86■■□□□ 1.25
CDH3-205ENST00000566808 LTBP1Q14766 1721 aa22.86■■□□□ 1.25
CDH3-205ENST00000566808 CAMTA2O94983 1202 aa22.86■■□□□ 1.25
CDH3-205ENST00000566808 MTHFSDQ2M296 383 aaKnown RBP22.86■■□□□ 1.25
CDH3-205ENST00000566808 NPM2Q86SE8 214 aaKnown RBP22.86■■□□□ 1.25
CDH3-205ENST00000566808 CCDC85CA6NKD9 419 aa22.85■■□□□ 1.25
CDH3-205ENST00000566808 HMOX1P09601 288 aa22.85■■□□□ 1.25
CDH3-205ENST00000566808 BEGAINQ9BUH8 593 aa22.85■■□□□ 1.25
CDH3-205ENST00000566808 ZNF277Q9NRM2 450 aaPredicted RBP22.85■■□□□ 1.25
CDH3-205ENST00000566808 NPR1P16066 1061 aa22.84■■□□□ 1.25
CDH3-205ENST00000566808 ZNF790Q6PG37 636 aa22.83■■□□□ 1.25
CDH3-205ENST00000566808 GPC2Q8N158 579 aa22.83■■□□□ 1.25
CDH3-205ENST00000566808 FZD9O00144 591 aa22.82■■□□□ 1.24
CDH3-205ENST00000566808 ECE1P42892 770 aa22.82■■□□□ 1.24
CDH3-205ENST00000566808 NBPF5PQ86XG9 351 aaPredicted RBP22.82■■□□□ 1.24
CDH3-205ENST00000566808 RTKN2Q8IZC4 609 aa22.82■■□□□ 1.24
CDH3-205ENST00000566808 CAPNS2Q96L46 248 aa22.82■■□□□ 1.24
CDH3-205ENST00000566808 DDX21Q9NR30 783 aaKnown RBP eCLIP22.82■■□□□ 1.24
CDH3-205ENST00000566808 TEFQ10587 303 aa22.81■■□□□ 1.24
CDH3-205ENST00000566808 IARSP41252 1262 aaKnown RBP22.8■■□□□ 1.24
CDH3-205ENST00000566808 DZIP3Q86Y13 1208 aaKnown RBP22.8■■□□□ 1.24
CDH3-205ENST00000566808 FMNL2Q96PY5 1086 aa22.8■■□□□ 1.24
CDH3-205ENST00000566808 KLRG2A4D1S0 409 aaPredicted RBP22.79■■□□□ 1.24
CDH3-205ENST00000566808 SNED1Q8TER0 1413 aa22.79■■□□□ 1.24
CDH3-205ENST00000566808 A1BGP04217 495 aa22.78■■□□□ 1.24
CDH3-205ENST00000566808 CLEC4GQ6UXB4 293 aa22.78■■□□□ 1.24
CDH3-205ENST00000566808 PAXIP1Q6ZW49 1069 aaPredicted RBP22.78■■□□□ 1.24
CDH3-205ENST00000566808 ZNF652Q9Y2D9 606 aa22.78■■□□□ 1.24
CDH3-205ENST00000566808 KNSTRNQ9Y448 316 aa22.78■■□□□ 1.24
CDH3-205ENST00000566808 TIMELESSQ9UNS1 1208 aa22.77■■□□□ 1.24
CDH3-205ENST00000566808 LMOD1P29536 600 aaPredicted RBP22.76■■□□□ 1.23
CDH3-205ENST00000566808 OLFM4Q6UX06 510 aa22.76■■□□□ 1.23
CDH3-205ENST00000566808 GPR101Q96P66 508 aaPredicted RBP22.76■■□□□ 1.23
CDH3-205ENST00000566808 COL4A5P29400 1685 aa22.75■■□□□ 1.23
CDH3-205ENST00000566808 CYP4F22Q6NT55 531 aa22.75■■□□□ 1.23
CDH3-205ENST00000566808 JDP2Q8WYK2 163 aa22.75■■□□□ 1.23
CDH3-205ENST00000566808 PSMD1Q99460 953 aa22.75■■□□□ 1.23
CDH3-205ENST00000566808 CASP8AP2Q9UKL3 1982 aa22.75■■□□□ 1.23
CDH3-205ENST00000566808 CA12O43570 354 aa22.74■■□□□ 1.23
CDH3-205ENST00000566808 GRM1Q13255 1194 aa22.74■■□□□ 1.23
CDH3-205ENST00000566808 SYNE4Q8N205 404 aa22.74■■□□□ 1.23
CDH3-205ENST00000566808 GNAT3A8MTJ3 354 aa22.73■■□□□ 1.23
CDH3-205ENST00000566808 RGL2O15211 777 aa22.73■■□□□ 1.23
CDH3-205ENST00000566808 DIAPH1O60610 1272 aaKnown RBP22.73■■□□□ 1.23
CDH3-205ENST00000566808 TPTE2Q6XPS3 522 aa22.73■■□□□ 1.23
CDH3-205ENST00000566808 IL17REQ8NFR9 667 aa22.73■■□□□ 1.23
CDH3-205ENST00000566808 GAS2L2Q8NHY3 880 aa22.73■■□□□ 1.23
CDH3-205ENST00000566808 ALDH1B1P30837 517 aa22.72■■□□□ 1.23
CDH3-205ENST00000566808 MAP2K2P36507 400 aa22.72■■□□□ 1.23
CDH3-205ENST00000566808 EIF6P56537 245 aaKnown RBP22.72■■□□□ 1.23
CDH3-205ENST00000566808 AMER1Q5JTC6 1135 aaPredicted RBP22.72■■□□□ 1.23
CDH3-205ENST00000566808 TLL2Q9Y6L7 1015 aa22.72■■□□□ 1.23
CDH3-205ENST00000566808 CEMIPQ8WUJ3 1361 aa22.72■■□□□ 1.23
CDH3-205ENST00000566808 EIF4G2P78344 907 aaKnown RBP eCLIP22.71■■□□□ 1.23
CDH3-205ENST00000566808 TSKSQ9UJT2 592 aa22.71■■□□□ 1.23
CDH3-205ENST00000566808 GJA3Q9Y6H8 435 aa22.71■■□□□ 1.23
CDH3-205ENST00000566808 COL3A1P02461 1466 aaPredicted RBP22.71■■□□□ 1.23
CDH3-205ENST00000566808 SCNN1DP51172 638 aa22.7■■□□□ 1.22
CDH3-205ENST00000566808 CFAP44Q96MT7 982 aa22.7■■□□□ 1.22
CDH3-205ENST00000566808 MCOLN1Q9GZU1 580 aa22.7■■□□□ 1.22
CDH3-205ENST00000566808 NIP7Q9Y221 180 aaKnown RBP eCLIP22.7■■□□□ 1.22
CDH3-205ENST00000566808 FMR1Q06787 632 aaKnown RBP eCLIP22.69■■□□□ 1.22
CDH3-205ENST00000566808 CST9Q5W186 159 aa22.69■■□□□ 1.22
CDH3-205ENST00000566808 CC2D2BQ6DHV5 1058 aa22.69■■□□□ 1.22
CDH3-205ENST00000566808 USP50Q70EL3 339 aaPredicted RBP22.69■■□□□ 1.22
CDH3-205ENST00000566808 LAMB4A4D0S4 1761 aa22.68■■□□□ 1.22
CDH3-205ENST00000566808 HSPA5P11021 654 aaKnown RBP22.68■■□□□ 1.22
CDH3-205ENST00000566808 TRAF5O00463 557 aa22.67■■□□□ 1.22
CDH3-205ENST00000566808 EPS15P42566 896 aa22.67■■□□□ 1.22
CDH3-205ENST00000566808 PIP4K2AP48426 406 aaPredicted RBP22.67■■□□□ 1.22
CDH3-205ENST00000566808 BTBD11A6QL63 1104 aa22.66■■□□□ 1.22
CDH3-205ENST00000566808 AOC2O75106 756 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms