RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 ZNF526Q8TF50 670 aaPredicted RBP13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 PLEKHF1Q96S99 279 aa13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 CCDC88AQ3V6T2 1871 aa13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 COL11A2P13942 1736 aaPredicted RBP13.33□□□□□ -0.28
GTF3C1-206ENST00000566779 POLRMTO00411 1230 aaKnown RBP13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 HTATSF1O43719 755 aaKnown RBP13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 SNRPA1P09661 255 aaKnown RBP13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 CHRNA5P30532 468 aa13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 NUBP1P53384 320 aa13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 TAF7Q15545 349 aaPredicted RBP13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 USP16Q9Y5T5 823 aa13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 NUP98P52948 1817 aa13.32□□□□□ -0.28
GTF3C1-206ENST00000566779 EIF5P55010 431 aaKnown RBP13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 RIPK4P57078 832 aa13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 CCDC24Q8N4L8 307 aa13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 NGEFQ8N5V2 710 aa13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 BCL2L12Q9HB09 334 aa13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 CARMIL3Q8ND23 1372 aa13.31□□□□□ -0.28
GTF3C1-206ENST00000566779 ATP10DQ9P241 1426 aa13.3□□□□□ -0.28
GTF3C1-206ENST00000566779 TGFB2P61812 414 aa13.3□□□□□ -0.28
GTF3C1-206ENST00000566779 TBC1D9BQ66K14 1250 aa13.3□□□□□ -0.28
GTF3C1-206ENST00000566779 DZIP3Q86Y13 1208 aaKnown RBP13.3□□□□□ -0.28
GTF3C1-206ENST00000566779 LAS1LQ9Y4W2 734 aaKnown RBP13.3□□□□□ -0.28
GTF3C1-206ENST00000566779 SERPINB2P05120 415 aa13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 IL6STP40189 918 aaPredicted RBP13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 ARHGAP27Q6ZUM4 889 aa13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 PNISRQ8TF01 805 aaKnown RBP13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 PRKRIP1Q9H875 184 aaPredicted RBP13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 TSPYL4Q9UJ04 414 aa13.29□□□□□ -0.28
GTF3C1-206ENST00000566779 SBF1O95248 1867 aa13.28□□□□□ -0.28
GTF3C1-206ENST00000566779 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
GTF3C1-206ENST00000566779 TM4SF1P30408 202 aa13.28□□□□□ -0.28
GTF3C1-206ENST00000566779 SENP3-EIF4A1A0A087X0R7 540 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 CAMTA2O94983 1202 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 MYL6BP14649 208 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 TMPOP42166 694 aaKnown RBP13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 LMOD3Q0VAK6 560 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 HS6ST3Q8IZP7 471 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 RNF25Q96BH1 459 aaPredicted RBP13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 PIM2Q9P1W9 311 aa13.27□□□□□ -0.29
GTF3C1-206ENST00000566779 DALRD3Q5D0E6 543 aaKnown RBP13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 C2CD5Q86YS7 1000 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 TIAM2Q8IVF5 1701 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 CNBD1Q8NA66 436 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 NECTIN2Q92692 538 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 RUNDC1Q96C34 613 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 TSHZ2Q9NRE2 1034 aa13.26□□□□□ -0.29
GTF3C1-206ENST00000566779 NBPF26B4DH59 902 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 GIGYF1O75420 1035 aaPredicted RBP13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 EIF2S2P20042 333 aaKnown RBP13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 EIF4A1P60842 406 aaKnown RBP13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 NBPF10Q6P3W6 841 aaKnown RBP13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 NBPF15Q8N660 670 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 SETDB2Q96T68 719 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 ADAMTS8Q9UP79 889 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 CLEC11AQ9Y240 323 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 ZNF652Q9Y2D9 606 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 ANKRD36CQ5JPF3 1778 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 ARFGEF2Q9Y6D5 1785 aa13.25□□□□□ -0.29
GTF3C1-206ENST00000566779 GOLGB1Q14789 3259 aaKnown RBP13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 UTRNP46939 3433 aa13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 ST5P78524 1137 aa13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 PRR5LQ6MZQ0 368 aa13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 ZNF622Q969S3 477 aaKnown RBP eCLIP13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 CREBZFQ9NS37 354 aa13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 TNRC6CQ9HCJ0 1690 aaKnown RBP13.24□□□□□ -0.29
GTF3C1-206ENST00000566779 SLX4Q8IY92 1834 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 ZNF316A6NFI3 1004 aaPredicted RBP13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 PRR29P0C7W0 189 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 KCNA3P22001 575 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 DCAF8Q5TAQ9 597 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 KIF6Q6ZMV9 814 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 NBPF5PQ86XG9 351 aaPredicted RBP13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 ZBTB3Q9H5J0 574 aa13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 GPBP1L1Q9HC44 474 aaPredicted RBP13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 NIP7Q9Y221 180 aaKnown RBP eCLIP13.23□□□□□ -0.29
GTF3C1-206ENST00000566779 ADCY9O60503 1353 aa13.22□□□□□ -0.29
GTF3C1-206ENST00000566779 H0YIN7 160 aa13.22□□□□□ -0.29
GTF3C1-206ENST00000566779 ANXA1P04083 346 aa13.21□□□□□ -0.29
GTF3C1-206ENST00000566779 GTF2E1P29083 439 aaPredicted RBP13.21□□□□□ -0.29
GTF3C1-206ENST00000566779 RASSF7Q02833 373 aa13.21□□□□□ -0.29
GTF3C1-206ENST00000566779 KRT24Q2M2I5 525 aa13.21□□□□□ -0.29
GTF3C1-206ENST00000566779 REM2Q8IYK8 340 aaPredicted RBP13.21□□□□□ -0.29
GTF3C1-206ENST00000566779 GPTP24298 496 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 PDE6BP35913 854 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 MNX1P50219 401 aaPredicted RBP13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 HLFQ16534 295 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 CCDC184Q52MB2 194 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 C9orf131Q5VYM1 1079 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 TTLL7Q6ZT98 887 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 TTLL6Q8N841 843 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 RNF181Q9P0P0 153 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 FER1L6Q2WGJ9 1857 aa13.2□□□□□ -0.3
GTF3C1-206ENST00000566779 DICER1Q9UPY3 1922 aaKnown RBP13.19□□□□□ -0.3
GTF3C1-206ENST00000566779 APAF1O14727 1248 aa13.19□□□□□ -0.3
GTF3C1-206ENST00000566779 ANP32CO43423 234 aa13.19□□□□□ -0.3
GTF3C1-206ENST00000566779 BRIP1Q9BX63 1249 aa13.19□□□□□ -0.3
GTF3C1-206ENST00000566779 TRIM35Q9UPQ4 493 aa13.19□□□□□ -0.3
GTF3C1-206ENST00000566779 MAP3K15Q6ZN16 1313 aa13.18□□□□□ -0.3
GTF3C1-206ENST00000566779 LAMB2P55268 1798 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms