RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ATP10DQ9P241 1426 aa12.87□□□□□ -0.35
CLN3-220ENST00000566040 HOXB7P09629 217 aa12.86□□□□□ -0.35
CLN3-220ENST00000566040 DUSP27Q5VZP5 1158 aa12.86□□□□□ -0.35
CLN3-220ENST00000566040 DZIP3Q86Y13 1208 aaKnown RBP12.86□□□□□ -0.35
CLN3-220ENST00000566040 NLGN1Q8N2Q7 840 aa12.86□□□□□ -0.35
CLN3-220ENST00000566040 TAF1P21675 1872 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 POLD1P28340 1107 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 WDR63Q8IWG1 891 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 NECTIN2Q92692 538 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 CHPF2Q9P2E5 772 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 UBN2Q6ZU65 1347 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 SBF1O95248 1867 aa12.85□□□□□ -0.35
CLN3-220ENST00000566040 SLX4Q8IY92 1834 aa12.84□□□□□ -0.35
CLN3-220ENST00000566040 MYL6BP14649 208 aa12.84□□□□□ -0.35
CLN3-220ENST00000566040 EIF2S2P20042 333 aaKnown RBP12.84□□□□□ -0.35
CLN3-220ENST00000566040 KCNA3P22001 575 aa12.84□□□□□ -0.35
CLN3-220ENST00000566040 PPP1R1BQ9UD71 204 aaPredicted RBP12.84□□□□□ -0.35
CLN3-220ENST00000566040 ZNF330Q9Y3S2 320 aaPredicted RBP12.84□□□□□ -0.35
CLN3-220ENST00000566040 MAP3K15Q6ZN16 1313 aa12.84□□□□□ -0.35
CLN3-220ENST00000566040 A0A087WZG4 1122 aa12.83□□□□□ -0.36
CLN3-220ENST00000566040 DDX21Q9NR30 783 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLN3-220ENST00000566040 CD2APQ9Y5K6 639 aa12.83□□□□□ -0.36
CLN3-220ENST00000566040 FER1L6Q2WGJ9 1857 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 CCDC88AQ3V6T2 1871 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 ABCC12Q96J65 1359 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 ELL2O00472 640 aaPredicted RBP12.82□□□□□ -0.36
CLN3-220ENST00000566040 RGL2O15211 777 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 ZPR1O75312 459 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 YBX3P16989 372 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN3-220ENST00000566040 CALD1Q05682 793 aaKnown RBP12.82□□□□□ -0.36
CLN3-220ENST00000566040 HDGFL1Q5TGJ6 251 aa12.82□□□□□ -0.36
CLN3-220ENST00000566040 TRMT2AQ8IZ69 625 aaKnown RBP12.82□□□□□ -0.36
CLN3-220ENST00000566040 PRR5LQ6MZQ0 368 aa12.81□□□□□ -0.36
CLN3-220ENST00000566040 NGEFQ8N5V2 710 aa12.81□□□□□ -0.36
CLN3-220ENST00000566040 XAGE3Q8WTP9 111 aa12.81□□□□□ -0.36
CLN3-220ENST00000566040 CDCA7LQ96GN5 454 aa12.81□□□□□ -0.36
CLN3-220ENST00000566040 MYH3P11055 1940 aa12.81□□□□□ -0.36
CLN3-220ENST00000566040 RIC1Q4ADV7 1423 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 ERVV-1B6SEH8 477 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 VAMP4O75379 141 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 SERPINB2P05120 415 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 EXOSC9Q06265 439 aaKnown RBP12.8□□□□□ -0.36
CLN3-220ENST00000566040 CLEC4GQ6UXB4 293 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 BICDL1Q6ZP65 573 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 G2E3Q7L622 706 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 ZNF34Q8IZ26 560 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 CCDC24Q8N4L8 307 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 ZBTB3Q9H5J0 574 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 PHAXQ9H814 394 aaKnown RBP12.8□□□□□ -0.36
CLN3-220ENST00000566040 ADCY9O60503 1353 aa12.8□□□□□ -0.36
CLN3-220ENST00000566040 IBTKQ9P2D0 1353 aaPredicted RBP12.8□□□□□ -0.36
CLN3-220ENST00000566040 LRRC37AA6NMS7 1700 aa12.79□□□□□ -0.36
CLN3-220ENST00000566040 SLFN5Q08AF3 891 aa12.79□□□□□ -0.36
CLN3-220ENST00000566040 GIGYF2Q6Y7W6 1299 aaKnown RBP12.79□□□□□ -0.36
CLN3-220ENST00000566040 COPS6Q7L5N1 327 aa12.79□□□□□ -0.36
CLN3-220ENST00000566040 PARP3Q9Y6F1 533 aa12.79□□□□□ -0.36
CLN3-220ENST00000566040 TCERG1O14776 1098 aaKnown RBP12.78□□□□□ -0.36
CLN3-220ENST00000566040 DPEP1P16444 411 aa12.78□□□□□ -0.36
CLN3-220ENST00000566040 TWISTNBQ3B726 338 aaPredicted RBP12.78□□□□□ -0.36
CLN3-220ENST00000566040 KLHL34Q8N239 644 aa12.78□□□□□ -0.36
CLN3-220ENST00000566040 SNED1Q8TER0 1413 aa12.78□□□□□ -0.36
CLN3-220ENST00000566040 DICER1Q9UPY3 1922 aaKnown RBP12.78□□□□□ -0.36
CLN3-220ENST00000566040 LTBP1Q14766 1721 aa12.77□□□□□ -0.36
CLN3-220ENST00000566040 A0A1B0GUL6 1792 aa12.77□□□□□ -0.36
CLN3-220ENST00000566040 SPEF2Q9C093 1822 aa12.77□□□□□ -0.37
CLN3-220ENST00000566040 A0A0G2JLW4 131 aa12.77□□□□□ -0.37
CLN3-220ENST00000566040 NTSR2O95665 410 aa12.77□□□□□ -0.37
CLN3-220ENST00000566040 CHRNA5P30532 468 aa12.77□□□□□ -0.37
CLN3-220ENST00000566040 DBF4Q9UBU7 674 aaPredicted RBP12.77□□□□□ -0.37
CLN3-220ENST00000566040 TIAM2Q8IVF5 1701 aa12.76□□□□□ -0.37
CLN3-220ENST00000566040 C3orf67Q6ZVT6 689 aa12.76□□□□□ -0.37
CLN3-220ENST00000566040 SLC51AQ86UW1 340 aa12.76□□□□□ -0.37
CLN3-220ENST00000566040 WWC3Q9ULE0 1092 aa12.76□□□□□ -0.37
CLN3-220ENST00000566040 NIP7Q9Y221 180 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLN3-220ENST00000566040 KLRG2A4D1S0 409 aaPredicted RBP12.75□□□□□ -0.37
CLN3-220ENST00000566040 GPTP24298 496 aa12.75□□□□□ -0.37
CLN3-220ENST00000566040 TGFB2P61812 414 aa12.75□□□□□ -0.37
CLN3-220ENST00000566040 AIMP1Q12904 312 aaKnown RBP12.75□□□□□ -0.37
CLN3-220ENST00000566040 SUSD4Q5VX71 490 aa12.75□□□□□ -0.37
CLN3-220ENST00000566040 SYNE4Q8N205 404 aa12.75□□□□□ -0.37
CLN3-220ENST00000566040 ISCA1Q9BUE6 129 aa12.75□□□□□ -0.37
CLN3-220ENST00000566040 GOLGA2Q08379 1002 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 KIF6Q6ZMV9 814 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 NLRP10Q86W26 655 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 PLBD2Q8NHP8 589 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 SETDB2Q96T68 719 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 HYPKQ9NX55 129 aa12.74□□□□□ -0.37
CLN3-220ENST00000566040 ERFEQ4G0M1 354 aa12.73□□□□□ -0.37
CLN3-220ENST00000566040 NUTM1Q86Y26 1132 aa12.73□□□□□ -0.37
CLN3-220ENST00000566040 CNBD1Q8NA66 436 aa12.73□□□□□ -0.37
CLN3-220ENST00000566040 ZNF428Q96B54 188 aa12.73□□□□□ -0.37
CLN3-220ENST00000566040 ZNF652Q9Y2D9 606 aa12.73□□□□□ -0.37
CLN3-220ENST00000566040 E9PSI1 815 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 IGKV5-2P06315 115 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 PRELPP51888 382 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 TCIRG1Q13488 830 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 CCDC30Q5VVM6 783 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 BRIP1Q9BX63 1249 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 MYH16Q9H6N6 1097 aa12.72□□□□□ -0.37
CLN3-220ENST00000566040 DUOX1Q9NRD9 1551 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms