RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NEFMP07197 916 aa22.71■■□□□ 1.23
CLN3-216ENST00000565316 SRGNP10124 158 aa22.71■■□□□ 1.23
CLN3-216ENST00000565316 DNAJC5GQ8N7S2 189 aa22.71■■□□□ 1.23
CLN3-216ENST00000565316 PNISRQ8TF01 805 aaKnown RBP22.71■■□□□ 1.23
CLN3-216ENST00000565316 TNRC6CQ9HCJ0 1690 aaKnown RBP22.71■■□□□ 1.23
CLN3-216ENST00000565316 C21orf2O43822 256 aa22.7■■□□□ 1.22
CLN3-216ENST00000565316 NFE2L2Q16236 605 aa22.7■■□□□ 1.22
CLN3-216ENST00000565316 CNKSR1Q969H4 720 aa22.7■■□□□ 1.22
CLN3-216ENST00000565316 NBPF5PQ86XG9 351 aaPredicted RBP22.69■■□□□ 1.22
CLN3-216ENST00000565316 LTBP3Q9NS15 1303 aa22.69■■□□□ 1.22
CLN3-216ENST00000565316 KLRG2A4D1S0 409 aaPredicted RBP22.68■■□□□ 1.22
CLN3-216ENST00000565316 NPHP1O15259 732 aa22.68■■□□□ 1.22
CLN3-216ENST00000565316 MASTLQ96GX5 879 aa22.68■■□□□ 1.22
CLN3-216ENST00000565316 PNNQ9H307 717 aaKnown RBP22.67■■□□□ 1.22
CLN3-216ENST00000565316 EIF4A1P60842 406 aaKnown RBP22.66■■□□□ 1.22
CLN3-216ENST00000565316 PRPF40BQ6NWY9 871 aaKnown RBP22.66■■□□□ 1.22
CLN3-216ENST00000565316 ZNF219Q9P2Y4 722 aaPredicted RBP22.66■■□□□ 1.22
CLN3-216ENST00000565316 NIP7Q9Y221 180 aaKnown RBP eCLIP22.66■■□□□ 1.22
CLN3-216ENST00000565316 FER1L6Q2WGJ9 1857 aa22.66■■□□□ 1.22
CLN3-216ENST00000565316 DLG5Q8TDM6 1919 aa22.66■■□□□ 1.22
CLN3-216ENST00000565316 VEGFAP15692 232 aaPredicted RBP22.65■■□□□ 1.22
CLN3-216ENST00000565316 HLFQ16534 295 aa22.65■■□□□ 1.22
CLN3-216ENST00000565316 TPTE2Q6XPS3 522 aa22.65■■□□□ 1.22
CLN3-216ENST00000565316 C7orf43Q8WVR3 580 aa22.65■■□□□ 1.22
CLN3-216ENST00000565316 KDM3BQ7LBC6 1761 aa22.65■■□□□ 1.22
CLN3-216ENST00000565316 SOGA3Q5TF21 947 aa22.64■■□□□ 1.22
CLN3-216ENST00000565316 SMC1BQ8NDV3 1235 aa22.64■■□□□ 1.22
CLN3-216ENST00000565316 THUMPD2Q9BTF0 503 aaKnown RBP22.64■■□□□ 1.22
CLN3-216ENST00000565316 SLX4Q8IY92 1834 aa22.64■■□□□ 1.22
CLN3-216ENST00000565316 TIAM2Q8IVF5 1701 aa22.64■■□□□ 1.21
CLN3-216ENST00000565316 LAMB4A4D0S4 1761 aa22.64■■□□□ 1.21
CLN3-216ENST00000565316 NPR1P16066 1061 aa22.63■■□□□ 1.21
CLN3-216ENST00000565316 RALBP1Q15311 655 aa22.63■■□□□ 1.21
CLN3-216ENST00000565316 TAOK3Q9H2K8 898 aa22.63■■□□□ 1.21
CLN3-216ENST00000565316 CCDC88AQ3V6T2 1871 aa22.63■■□□□ 1.21
CLN3-216ENST00000565316 POTECB2RU33 542 aa22.62■■□□□ 1.21
CLN3-216ENST00000565316 ERVV-1B6SEH8 477 aa22.62■■□□□ 1.21
CLN3-216ENST00000565316 ERFEQ4G0M1 354 aa22.62■■□□□ 1.21
CLN3-216ENST00000565316 MAPK8IP3Q9UPT6 1336 aa22.62■■□□□ 1.21
CLN3-216ENST00000565316 ARFGEF2Q9Y6D5 1785 aa22.62■■□□□ 1.21
CLN3-216ENST00000565316 DPY19L2Q6NUT2 758 aa22.61■■□□□ 1.21
CLN3-216ENST00000565316 WDR90Q96KV7 1748 aa22.61■■□□□ 1.21
CLN3-216ENST00000565316 DICER1Q9UPY3 1922 aaKnown RBP22.6■■□□□ 1.21
CLN3-216ENST00000565316 MAP3K15Q6ZN16 1313 aa22.59■■□□□ 1.21
CLN3-216ENST00000565316 IFFO2Q5TF58 517 aa22.58■■□□□ 1.21
CLN3-216ENST00000565316 HTRA3P83110 453 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 ERBB4Q15303 1308 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 TTLL7Q6ZT98 887 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 RRP7AQ9Y3A4 280 aaKnown RBP22.57■■□□□ 1.2
CLN3-216ENST00000565316 FAM177BA6PVY3 158 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 CCDC93Q567U6 631 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 NGEFQ8N5V2 710 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 KLRG1Q96E93 195 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 NYXQ9GZU5 481 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 BABAM1Q9NWV8 329 aa22.57■■□□□ 1.2
CLN3-216ENST00000565316 RIPK4P57078 832 aa22.56■■□□□ 1.2
CLN3-216ENST00000565316 CRY2Q49AN0 593 aa22.56■■□□□ 1.2
CLN3-216ENST00000565316 KIF6Q6ZMV9 814 aa22.56■■□□□ 1.2
CLN3-216ENST00000565316 MYL6BP14649 208 aa22.55■■□□□ 1.2
CLN3-216ENST00000565316 GTF2E1P29083 439 aaPredicted RBP22.55■■□□□ 1.2
CLN3-216ENST00000565316 ALDH1B1P30837 517 aa22.55■■□□□ 1.2
CLN3-216ENST00000565316 JMYQ8N9B5 988 aa22.55■■□□□ 1.2
CLN3-216ENST00000565316 TSPYL4Q9UJ04 414 aa22.55■■□□□ 1.2
CLN3-216ENST00000565316 CACNA1SQ13698 1873 aa22.54■■□□□ 1.2
CLN3-216ENST00000565316 IBTKQ9P2D0 1353 aaPredicted RBP22.54■■□□□ 1.2
CLN3-216ENST00000565316 TMPOP42166 694 aaKnown RBP22.54■■□□□ 1.2
CLN3-216ENST00000565316 FKBP4Q02790 459 aaKnown RBP eCLIP22.54■■□□□ 1.2
CLN3-216ENST00000565316 ABCC12Q96J65 1359 aa22.53■■□□□ 1.2
CLN3-216ENST00000565316 LRP10Q7Z4F1 713 aa22.53■■□□□ 1.2
CLN3-216ENST00000565316 ZNF34Q8IZ26 560 aa22.53■■□□□ 1.2
CLN3-216ENST00000565316 RTKN2Q8IZC4 609 aa22.53■■□□□ 1.2
CLN3-216ENST00000565316 RIC1Q4ADV7 1423 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 NUP98P52948 1817 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 UBN2Q6ZU65 1347 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 DDNO94850 711 aaPredicted RBP22.52■■□□□ 1.2
CLN3-216ENST00000565316 PDIA6Q15084 440 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 OLFM4Q6UX06 510 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 NUTM1Q86Y26 1132 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 ZBTB3Q9H5J0 574 aa22.52■■□□□ 1.2
CLN3-216ENST00000565316 MYBBP1AQ9BQG0 1328 aaKnown RBP22.51■■□□□ 1.19
CLN3-216ENST00000565316 HOXA10P31260 410 aaPredicted RBP22.51■■□□□ 1.19
CLN3-216ENST00000565316 LMOD3Q0VAK6 560 aa22.51■■□□□ 1.19
CLN3-216ENST00000565316 DDX10Q13206 875 aaKnown RBP22.51■■□□□ 1.19
CLN3-216ENST00000565316 GIGYF2Q6Y7W6 1299 aaKnown RBP22.51■■□□□ 1.19
CLN3-216ENST00000565316 GPTP24298 496 aa22.5■■□□□ 1.19
CLN3-216ENST00000565316 SUSD4Q5VX71 490 aa22.5■■□□□ 1.19
CLN3-216ENST00000565316 L3MBTL3Q96JM7 780 aaPredicted RBP22.5■■□□□ 1.19
CLN3-216ENST00000565316 ZNF277Q9NRM2 450 aaPredicted RBP22.5■■□□□ 1.19
CLN3-216ENST00000565316 SNED1Q8TER0 1413 aa22.5■■□□□ 1.19
CLN3-216ENST00000565316 NTSR2O95665 410 aa22.48■■□□□ 1.19
CLN3-216ENST00000565316 PARP10Q53GL7 1025 aa22.47■■□□□ 1.19
CLN3-216ENST00000565316 CC2D2BQ6DHV5 1058 aa22.47■■□□□ 1.19
CLN3-216ENST00000565316 CHADLQ6NUI6 762 aa22.47■■□□□ 1.19
CLN3-216ENST00000565316 SYNE4Q8N205 404 aa22.47■■□□□ 1.19
CLN3-216ENST00000565316 PSMD1Q99460 953 aa22.47■■□□□ 1.19
CLN3-216ENST00000565316 IQCA1LA6NCM1 817 aa22.46■■□□□ 1.19
CLN3-216ENST00000565316 EIF2S2P20042 333 aaKnown RBP22.46■■□□□ 1.19
CLN3-216ENST00000565316 PROSER3Q2NL68 480 aa22.46■■□□□ 1.19
CLN3-216ENST00000565316 PCNTO95613 3336 aa22.45■■□□□ 1.18
CLN3-216ENST00000565316 CHL1O00533 1208 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms