RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 HACL1Q9UJ83 578 aa9.96□□□□□ -0.82
VPS4A-203ENST00000564399 ABT1Q9ULW3 272 aaKnown RBP9.96□□□□□ -0.82
VPS4A-203ENST00000564399 MRC1P22897 1456 aa9.96□□□□□ -0.82
VPS4A-203ENST00000564399 PDE4DIPQ5VU43 2346 aa9.95□□□□□ -0.82
VPS4A-203ENST00000564399 CCDC85CA6NKD9 419 aa9.95□□□□□ -0.82
VPS4A-203ENST00000564399 SRGNP10124 158 aa9.95□□□□□ -0.82
VPS4A-203ENST00000564399 EPHX2P34913 555 aa9.95□□□□□ -0.82
VPS4A-203ENST00000564399 MAP2K1Q02750 393 aaPredicted RBP9.95□□□□□ -0.82
VPS4A-203ENST00000564399 MTHFSDQ2M296 383 aaKnown RBP9.95□□□□□ -0.82
VPS4A-203ENST00000564399 TEX13AQ9BXU3 409 aaPredicted RBP9.95□□□□□ -0.82
VPS4A-203ENST00000564399 UBR2Q8IWV8 1755 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 ARFGEF2Q9Y6D5 1785 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 WDR33Q9C0J8 1336 aaKnown RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 ZNF541Q9H0D2 1346 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 MLLT1Q03111 559 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 CCDC93Q567U6 631 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 MAP1SQ66K74 1059 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 PAXIP1Q6ZW49 1069 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 PNMA8AQ86V59 439 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 CNTROBQ8N137 903 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 ZNF496Q96IT1 587 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 BEGAINQ9BUH8 593 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 ZNF277Q9NRM2 450 aaPredicted RBP9.94□□□□□ -0.82
VPS4A-203ENST00000564399 KNSTRNQ9Y448 316 aa9.94□□□□□ -0.82
VPS4A-203ENST00000564399 SCN7AQ01118 1682 aa9.93□□□□□ -0.82
VPS4A-203ENST00000564399 RNF123Q5XPI4 1314 aa9.93□□□□□ -0.82
VPS4A-203ENST00000564399 RASSF10A6NK89 507 aa9.93□□□□□ -0.82
VPS4A-203ENST00000564399 IL6STP40189 918 aaPredicted RBP9.93□□□□□ -0.82
VPS4A-203ENST00000564399 TEFQ10587 303 aa9.93□□□□□ -0.82
VPS4A-203ENST00000564399 GRM1Q13255 1194 aa9.93□□□□□ -0.82
VPS4A-203ENST00000564399 NBPF5PQ86XG9 351 aaPredicted RBP9.93□□□□□ -0.82
VPS4A-203ENST00000564399 HEG1Q9ULI3 1381 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 CAMTA2O94983 1202 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 A1BGP04217 495 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 NPR1P16066 1061 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 FKBP4Q02790 459 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS4A-203ENST00000564399 ZNF790Q6PG37 636 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 DZIP3Q86Y13 1208 aaKnown RBP9.92□□□□□ -0.82
VPS4A-203ENST00000564399 CFAP44Q96MT7 982 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 CASP8AP2Q9UKL3 1982 aa9.92□□□□□ -0.82
VPS4A-203ENST00000564399 OLFM4Q6UX06 510 aa9.91□□□□□ -0.82
VPS4A-203ENST00000564399 RTKN2Q8IZC4 609 aa9.91□□□□□ -0.82
VPS4A-203ENST00000564399 C7orf43Q8WVR3 580 aa9.91□□□□□ -0.82
VPS4A-203ENST00000564399 FMNL2Q96PY5 1086 aa9.91□□□□□ -0.82
VPS4A-203ENST00000564399 DIAPH1O60610 1272 aaKnown RBP9.9□□□□□ -0.82
VPS4A-203ENST00000564399 IARSP41252 1262 aaKnown RBP9.9□□□□□ -0.82
VPS4A-203ENST00000564399 ECE1P42892 770 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 EIF4G2P78344 907 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS4A-203ENST00000564399 SYNE4Q8N205 404 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 JDP2Q8WYK2 163 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 CAPNS2Q96L46 248 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 DDX21Q9NR30 783 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS4A-203ENST00000564399 GJA3Q9Y6H8 435 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 ADAMTSL1Q8N6G6 1762 aa9.9□□□□□ -0.82
VPS4A-203ENST00000564399 TRPM7Q96QT4 1865 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 FAM177BA6PVY3 158 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 GNAT3A8MTJ3 354 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 FZD9O00144 591 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 HSPA5P11021 654 aaKnown RBP9.89□□□□□ -0.83
VPS4A-203ENST00000564399 LMOD1P29536 600 aaPredicted RBP9.89□□□□□ -0.83
VPS4A-203ENST00000564399 PIP4K2AP48426 406 aaPredicted RBP9.89□□□□□ -0.83
VPS4A-203ENST00000564399 CYP4F22Q6NT55 531 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 TPTE2Q6XPS3 522 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 GPC2Q8N158 579 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 IL17REQ8NFR9 667 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 GPR101Q96P66 508 aaPredicted RBP9.89□□□□□ -0.83
VPS4A-203ENST00000564399 TSKSQ9UJT2 592 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 ZNF652Q9Y2D9 606 aa9.89□□□□□ -0.83
VPS4A-203ENST00000564399 BCORQ6W2J9 1755 aa9.88□□□□□ -0.83
VPS4A-203ENST00000564399 GTF2E1P29083 439 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-203ENST00000564399 ALDH1B1P30837 517 aa9.88□□□□□ -0.83
VPS4A-203ENST00000564399 RGS19P49795 217 aa9.88□□□□□ -0.83
VPS4A-203ENST00000564399 EIF6P56537 245 aaKnown RBP9.88□□□□□ -0.83
VPS4A-203ENST00000564399 FMR1Q06787 632 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS4A-203ENST00000564399 CLEC4GQ6UXB4 293 aa9.88□□□□□ -0.83
VPS4A-203ENST00000564399 TIMELESSQ9UNS1 1208 aa9.88□□□□□ -0.83
VPS4A-203ENST00000564399 NIP7Q9Y221 180 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS4A-203ENST00000564399 U2SURPO15042 1029 aaKnown RBP9.87□□□□□ -0.83
VPS4A-203ENST00000564399 GAS2L2Q8NHY3 880 aa9.87□□□□□ -0.83
VPS4A-203ENST00000564399 USP16Q9Y5T5 823 aa9.87□□□□□ -0.83
VPS4A-203ENST00000564399 SIPA1L3O60292 1781 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-203ENST00000564399 KLRG2A4D1S0 409 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-203ENST00000564399 BTBD11A6QL63 1104 aa9.86□□□□□ -0.83
VPS4A-203ENST00000564399 KCNQ3O43525 872 aa9.86□□□□□ -0.83
VPS4A-203ENST00000564399 EPS15P42566 896 aa9.86□□□□□ -0.83
VPS4A-203ENST00000564399 AMER1Q5JTC6 1135 aaPredicted RBP9.86□□□□□ -0.83
VPS4A-203ENST00000564399 TRAF5O00463 557 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 AOC2O75106 756 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 MAP2K2P36507 400 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 LARGE2Q8N3Y3 721 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 PSMD1Q99460 953 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 MCOLN1Q9GZU1 580 aa9.85□□□□□ -0.83
VPS4A-203ENST00000564399 PRAMEF22A3QJZ6 481 aa9.84□□□□□ -0.83
VPS4A-203ENST00000564399 SNRPA1P09661 255 aaKnown RBP9.84□□□□□ -0.83
VPS4A-203ENST00000564399 CNGB1Q14028 1251 aaPredicted RBP9.84□□□□□ -0.83
VPS4A-203ENST00000564399 CC2D1BQ5T0F9 858 aaKnown RBP9.84□□□□□ -0.83
VPS4A-203ENST00000564399 CST9Q5W186 159 aa9.84□□□□□ -0.83
VPS4A-203ENST00000564399 CC2D2BQ6DHV5 1058 aa9.84□□□□□ -0.83
VPS4A-203ENST00000564399 USP50Q70EL3 339 aaPredicted RBP9.84□□□□□ -0.83
VPS4A-203ENST00000564399 TLL2Q9Y6L7 1015 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms