RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 ANKRD13DQ6ZTN6 518 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 RGPD4Q7Z3J3 1758 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 RIC3Q7Z5B4 369 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 LINC00116Q8NCU8 138 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 CCDC87Q9NVE4 849 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 PCDHB15Q9Y5E8 787 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 UBR3Q6ZT12 1888 aa12.84□□□□□ -0.35
SMG1-208ENST00000563448 IL6STP40189 918 aaPredicted RBP12.83□□□□□ -0.36
SMG1-208ENST00000563448 PLBD2Q8NHP8 589 aa12.83□□□□□ -0.36
SMG1-208ENST00000563448 SRCIN1Q9C0H9 1055 aa12.83□□□□□ -0.36
SMG1-208ENST00000563448 CHMP4BQ9H444 224 aaKnown RBP12.83□□□□□ -0.36
SMG1-208ENST00000563448 CCNL1Q9UK58 526 aaPredicted RBP12.83□□□□□ -0.36
SMG1-208ENST00000563448 C4AP0C0L4 1744 aa12.83□□□□□ -0.36
SMG1-208ENST00000563448 SOCS7O14512 581 aa12.83□□□□□ -0.36
SMG1-208ENST00000563448 MEIS3Q99687 375 aa12.83□□□□□ -0.36
SMG1-208ENST00000563448 METTL22Q9BUU2 404 aaPredicted RBP12.83□□□□□ -0.36
SMG1-208ENST00000563448 ZNF330Q9Y3S2 320 aaPredicted RBP12.83□□□□□ -0.36
SMG1-208ENST00000563448 C1orf115Q9H7X2 142 aa12.82□□□□□ -0.36
SMG1-208ENST00000563448 CNTNAP4Q9C0A0 1308 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 EIF5P55010 431 aaKnown RBP12.81□□□□□ -0.36
SMG1-208ENST00000563448 CWF19L2Q2TBE0 894 aaKnown RBP12.81□□□□□ -0.36
SMG1-208ENST00000563448 MYD88Q99836 296 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 USP44Q9H0E7 712 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 TUBGCP6Q96RT7 1819 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 ALDH1L1O75891 902 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 IGKV5-2P06315 115 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 LINS1Q8NG48 757 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 ZBTB3Q9H5J0 574 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 EP400Q96L91 3159 aa12.81□□□□□ -0.36
SMG1-208ENST00000563448 SCN7AQ01118 1682 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 IGHDP01880 384 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 KIF6Q6ZMV9 814 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 LRRC4BQ9NT99 713 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 MAP3K15Q6ZN16 1313 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 KDM2BQ8NHM5 1336 aa12.8□□□□□ -0.36
SMG1-208ENST00000563448 NEXNQ0ZGT2 675 aa12.79□□□□□ -0.36
SMG1-208ENST00000563448 RC3H1Q5TC82 1133 aaKnown RBP12.79□□□□□ -0.36
SMG1-208ENST00000563448 IBTKQ9P2D0 1353 aaPredicted RBP12.79□□□□□ -0.36
SMG1-208ENST00000563448 NEURL1BA8MQ27 555 aa12.79□□□□□ -0.36
SMG1-208ENST00000563448 COL15A1P39059 1388 aa12.79□□□□□ -0.36
SMG1-208ENST00000563448 MYH3P11055 1940 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 PLSCR1O15162 318 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 APBA3O96018 575 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 GNAI3P08754 354 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 NBPF7P0C2Y1 421 aaPredicted RBP12.78□□□□□ -0.36
SMG1-208ENST00000563448 DZIP3Q86Y13 1208 aaKnown RBP12.78□□□□□ -0.36
SMG1-208ENST00000563448 PROM2Q8N271 834 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 TBC1D2BQ9UPU7 963 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 CASZ1Q86V15 1759 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 ATP5J2-PTCD1G3V325 749 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 HLFQ16534 295 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 SLC27A3Q5K4L6 730 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 ARXQ96QS3 562 aa12.78□□□□□ -0.36
SMG1-208ENST00000563448 RPS6KA4O75676 772 aa12.77□□□□□ -0.37
SMG1-208ENST00000563448 GCKRQ14397 625 aa12.77□□□□□ -0.37
SMG1-208ENST00000563448 TXNRD1Q16881 649 aa12.77□□□□□ -0.37
SMG1-208ENST00000563448 GIGYF2Q6Y7W6 1299 aaKnown RBP12.77□□□□□ -0.37
SMG1-208ENST00000563448 NPM2Q86SE8 214 aaKnown RBP12.77□□□□□ -0.37
SMG1-208ENST00000563448 UTYO14607 1347 aa12.77□□□□□ -0.37
SMG1-208ENST00000563448 ERVV-1B6SEH8 477 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 GNAI2P04899 355 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 UBTFL1P0CB47 393 aaPredicted RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 TCIRG1Q13488 830 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 HDAC1Q13547 482 aaPredicted RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 CENPQQ7L2Z9 268 aaPredicted RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 SIRT2Q8IXJ6 389 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 ISCA1Q9BUE6 129 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 RWDD1Q9H446 243 aaPredicted RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 GRM8O00222 908 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 CEP85Q6P2H3 762 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 SMIM5Q71RC9 77 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 ANKRD44Q8N8A2 993 aa12.76□□□□□ -0.37
SMG1-208ENST00000563448 C9orf78Q9NZ63 289 aaPredicted RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 LRRFIP2Q9Y608 721 aaKnown RBP12.76□□□□□ -0.37
SMG1-208ENST00000563448 A0A087WZG4 1122 aa12.75□□□□□ -0.37
SMG1-208ENST00000563448 GNPATO15228 680 aa12.75□□□□□ -0.37
SMG1-208ENST00000563448 CAMTA2O94983 1202 aa12.75□□□□□ -0.37
SMG1-208ENST00000563448 AMIGO3Q86WK7 504 aa12.75□□□□□ -0.37
SMG1-208ENST00000563448 RPAP2Q8IXW5 612 aaPredicted RBP12.74□□□□□ -0.37
SMG1-208ENST00000563448 HSP90AB3PQ58FF7 597 aa12.74□□□□□ -0.37
SMG1-208ENST00000563448 CCDC191Q8NCU4 936 aa12.74□□□□□ -0.37
SMG1-208ENST00000563448 CWC25Q9NXE8 425 aaPredicted RBP12.74□□□□□ -0.37
SMG1-208ENST00000563448 RTCBQ9Y3I0 505 aaKnown RBP12.74□□□□□ -0.37
SMG1-208ENST00000563448 LAMB2P55268 1798 aa12.74□□□□□ -0.37
SMG1-208ENST00000563448 COL24A1Q17RW2 1714 aa12.73□□□□□ -0.37
SMG1-208ENST00000563448 DDX60Q8IY21 1712 aaKnown RBP12.73□□□□□ -0.37
SMG1-208ENST00000563448 TRIM28Q13263 835 aaKnown RBP12.73□□□□□ -0.37
SMG1-208ENST00000563448 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
SMG1-208ENST00000563448 AK7Q96M32 723 aa12.73□□□□□ -0.37
SMG1-208ENST00000563448 QSER1Q2KHR3 1735 aa12.73□□□□□ -0.37
SMG1-208ENST00000563448 H7C1W4 665 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 CASP7P55210 303 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 ZNF34Q8IZ26 560 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 KAZALD1Q96I82 304 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 SUCLG2Q96I99 432 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 GPTP24298 496 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 NARFQ9UHQ1 456 aa12.72□□□□□ -0.37
SMG1-208ENST00000563448 PNMA6EA0A0J9YXQ4 647 aa12.71□□□□□ -0.37
SMG1-208ENST00000563448 UBE3BQ7Z3V4 1068 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms