RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	NBPF15	Q8N660	670 aa		27.87	■■■□□ 2.05
CHD9-208	ENST00000563410	CNBD1	Q8NA66	436 aa		27.87	■■■□□ 2.05
CHD9-208	ENST00000563410	CLEC4G	Q6UXB4	293 aa		27.86	■■■□□ 2.05
CHD9-208	ENST00000563410	C16orf71	Q8IYS4	520 aa	Predicted RBP	27.86	■■■□□ 2.05
CHD9-208	ENST00000563410	PLEKHF1	Q96S99	279 aa		27.86	■■■□□ 2.05
CHD9-208	ENST00000563410	MIS18A	Q9NYP9	233 aa		27.85	■■■□□ 2.05
CHD9-208	ENST00000563410	C21orf2	O43822	256 aa		27.84	■■■□□ 2.05
CHD9-208	ENST00000563410	ST5	P78524	1137 aa		27.83	■■■□□ 2.05
CHD9-208	ENST00000563410	ZNF219	Q9P2Y4	722 aa	Predicted RBP	27.83	■■■□□ 2.05
CHD9-208	ENST00000563410	GLTPD2	A6NH11	291 aa		27.82	■■■□□ 2.04
CHD9-208	ENST00000563410	SRGN	P10124	158 aa		27.82	■■■□□ 2.04
CHD9-208	ENST00000563410	FSTL1	Q12841	308 aa		27.82	■■■□□ 2.04
CHD9-208	ENST00000563410	DNAJC5G	Q8N7S2	189 aa		27.82	■■■□□ 2.04
CHD9-208	ENST00000563410	NPHP1	O15259	732 aa		27.81	■■■□□ 2.04
CHD9-208	ENST00000563410	STYK1	Q6J9G0	422 aa		27.81	■■■□□ 2.04
CHD9-208	ENST00000563410	ZNF652	Q9Y2D9	606 aa		27.81	■■■□□ 2.04
CHD9-208	ENST00000563410	NUP98	P52948	1817 aa		27.8	■■■□□ 2.04
CHD9-208	ENST00000563410	RGL2	O15211	777 aa		27.79	■■■□□ 2.04
CHD9-208	ENST00000563410	NEFM	P07197	916 aa		27.79	■■■□□ 2.04
CHD9-208	ENST00000563410	NFE2L2	Q16236	605 aa		27.79	■■■□□ 2.04
CHD9-208	ENST00000563410	NBPF5P	Q86XG9	351 aa	Predicted RBP	27.79	■■■□□ 2.04
CHD9-208	ENST00000563410	CNKSR1	Q969H4	720 aa		27.79	■■■□□ 2.04
CHD9-208	ENST00000563410	MASTL	Q96GX5	879 aa		27.78	■■■□□ 2.04
CHD9-208	ENST00000563410	LTBP3	Q9NS15	1303 aa		27.77	■■■□□ 2.04
CHD9-208	ENST00000563410	HLF	Q16534	295 aa		27.77	■■■□□ 2.04
CHD9-208	ENST00000563410	PRPF40B	Q6NWY9	871 aa	Known RBP	27.77	■■■□□ 2.04
CHD9-208	ENST00000563410	PNISR	Q8TF01	805 aa	Known RBP	27.77	■■■□□ 2.04
CHD9-208	ENST00000563410	NIP7	Q9Y221	180 aa	Known RBP eCLIP	27.77	■■■□□ 2.04
CHD9-208	ENST00000563410	THUMPD2	Q9BTF0	503 aa	Known RBP	27.76	■■■□□ 2.03
CHD9-208	ENST00000563410	VEGFA	P15692	232 aa	Predicted RBP	27.75	■■■□□ 2.03
CHD9-208	ENST00000563410	EIF4A1	P60842	406 aa	Known RBP	27.75	■■■□□ 2.03
CHD9-208	ENST00000563410	HTRA3	P83110	453 aa		27.75	■■■□□ 2.03
CHD9-208	ENST00000563410	KLRG2	A4D1S0	409 aa	Predicted RBP	27.74	■■■□□ 2.03
CHD9-208	ENST00000563410	POTEC	B2RU33	542 aa		27.74	■■■□□ 2.03
CHD9-208	ENST00000563410	TPTE2	Q6XPS3	522 aa		27.73	■■■□□ 2.03
CHD9-208	ENST00000563410	SMC1B	Q8NDV3	1235 aa		27.73	■■■□□ 2.03
CHD9-208	ENST00000563410	C7orf43	Q8WVR3	580 aa		27.73	■■■□□ 2.03
CHD9-208	ENST00000563410	TAOK3	Q9H2K8	898 aa		27.73	■■■□□ 2.03
CHD9-208	ENST00000563410	ERFE	Q4G0M1	354 aa		27.72	■■■□□ 2.03
CHD9-208	ENST00000563410	PNN	Q9H307	717 aa	Known RBP	27.71	■■■□□ 2.03
CHD9-208	ENST00000563410	MAPK8IP3	Q9UPT6	1336 aa		27.7	■■■□□ 2.03
CHD9-208	ENST00000563410	FAM177B	A6PVY3	158 aa		27.7	■■■□□ 2.02
CHD9-208	ENST00000563410	NPR1	P16066	1061 aa		27.7	■■■□□ 2.02
CHD9-208	ENST00000563410	SOGA3	Q5TF21	947 aa		27.7	■■■□□ 2.02
CHD9-208	ENST00000563410	DPY19L2	Q6NUT2	758 aa		27.7	■■■□□ 2.02
CHD9-208	ENST00000563410	NGEF	Q8N5V2	710 aa		27.7	■■■□□ 2.02
CHD9-208	ENST00000563410	IFFO2	Q5TF58	517 aa		27.69	■■■□□ 2.02
CHD9-208	ENST00000563410	RRP7A	Q9Y3A4	280 aa	Known RBP	27.68	■■■□□ 2.02
CHD9-208	ENST00000563410	ERVV-1	B6SEH8	477 aa		27.67	■■■□□ 2.02
CHD9-208	ENST00000563410	RALBP1	Q15311	655 aa		27.67	■■■□□ 2.02
CHD9-208	ENST00000563410	TTLL7	Q6ZT98	887 aa		27.67	■■■□□ 2.02
CHD9-208	ENST00000563410	MAP3K15	Q6ZN16	1313 aa		27.67	■■■□□ 2.02
CHD9-208	ENST00000563410	KLRG1	Q96E93	195 aa		27.66	■■■□□ 2.02
CHD9-208	ENST00000563410	MYL6B	P14649	208 aa		27.65	■■■□□ 2.02
CHD9-208	ENST00000563410	CCDC93	Q567U6	631 aa		27.65	■■■□□ 2.02
CHD9-208	ENST00000563410	ABCC12	Q96J65	1359 aa		27.64	■■■□□ 2.02
CHD9-208	ENST00000563410	OLFM4	Q6UX06	510 aa		27.64	■■■□□ 2.02
CHD9-208	ENST00000563410	PCNT	O95613	3336 aa		27.64	■■■□□ 2.01
CHD9-208	ENST00000563410	DDN	O94850	711 aa	Predicted RBP	27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	GTF2E1	P29083	439 aa	Predicted RBP	27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	RIPK4	P57078	832 aa		27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	KIF6	Q6ZMV9	814 aa		27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	NUTM1	Q86Y26	1132 aa		27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	TSPYL4	Q9UJ04	414 aa		27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	UBN2	Q6ZU65	1347 aa		27.62	■■■□□ 2.01
CHD9-208	ENST00000563410	FKBP4	Q02790	459 aa	Known RBP eCLIP	27.61	■■■□□ 2.01	1e-6	■■■■■ 33.9
CHD9-208	ENST00000563410	CRY2	Q49AN0	593 aa		27.61	■■■□□ 2.01
CHD9-208	ENST00000563410	JMY	Q8N9B5	988 aa		27.61	■■■□□ 2.01
CHD9-208	ENST00000563410	NYX	Q9GZU5	481 aa		27.61	■■■□□ 2.01
CHD9-208	ENST00000563410	ZBTB3	Q9H5J0	574 aa		27.61	■■■□□ 2.01
CHD9-208	ENST00000563410	ERBB4	Q15303	1308 aa		27.61	■■■□□ 2.01
CHD9-208	ENST00000563410	SCN4A	P35499	1836 aa		27.6	■■■□□ 2.01
CHD9-208	ENST00000563410	LRP10	Q7Z4F1	713 aa		27.6	■■■□□ 2.01
CHD9-208	ENST00000563410	GPT	P24298	496 aa		27.59	■■■□□ 2.01
CHD9-208	ENST00000563410	ALDH1B1	P30837	517 aa		27.59	■■■□□ 2.01
CHD9-208	ENST00000563410	TMPO	P42166	694 aa	Known RBP	27.59	■■■□□ 2.01
CHD9-208	ENST00000563410	IBTK	Q9P2D0	1353 aa	Predicted RBP	27.59	■■■□□ 2.01
CHD9-208	ENST00000563410	RIC1	Q4ADV7	1423 aa		27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	SNED1	Q8TER0	1413 aa		27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	DDX10	Q13206	875 aa	Known RBP	27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	PDIA6	Q15084	440 aa		27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	GIGYF2	Q6Y7W6	1299 aa	Known RBP	27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	ZNF34	Q8IZ26	560 aa		27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	ZNF277	Q9NRM2	450 aa	Predicted RBP	27.58	■■■□□ 2.01
CHD9-208	ENST00000563410	SUSD4	Q5VX71	490 aa		27.57	■■■□□ 2
CHD9-208	ENST00000563410	RTKN2	Q8IZC4	609 aa		27.57	■■■□□ 2
CHD9-208	ENST00000563410	POTEI	P0CG38	1075 aa		27.56	■■■□□ 2
CHD9-208	ENST00000563410	POTEJ	P0CG39	1038 aa		27.56	■■■□□ 2
CHD9-208	ENST00000563410	BABAM1	Q9NWV8	329 aa		27.56	■■■□□ 2
CHD9-208	ENST00000563410	MYBBP1A	Q9BQG0	1328 aa	Known RBP	27.56	■■■□□ 2
CHD9-208	ENST00000563410	ANKRD36C	Q5JPF3	1778 aa		27.55	■■■□□ 2
CHD9-208	ENST00000563410	NTSR2	O95665	410 aa		27.54	■■■□□ 2
CHD9-208	ENST00000563410	EIF2S2	P20042	333 aa	Known RBP	27.54	■■■□□ 2
CHD9-208	ENST00000563410	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.54	■■■□□ 2
CHD9-208	ENST00000563410	ZNF541	Q9H0D2	1346 aa		27.53	■■■□□ 2
CHD9-208	ENST00000563410	LMOD3	Q0VAK6	560 aa		27.53	■■■□□ 2
CHD9-208	ENST00000563410	PROSER3	Q2NL68	480 aa		27.53	■■■□□ 2
CHD9-208	ENST00000563410	ANXA1	P04083	346 aa		27.52	■■■□□ 2
CHD9-208	ENST00000563410	HOXA10	P31260	410 aa	Predicted RBP	27.52	■■■□□ 2
CHD9-208	ENST00000563410	CHADL	Q6NUI6	762 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms