RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 GOLGA2Q08379 1002 aa21.61■■□□□ 1.05
CLK3-207ENST00000562389 DBF4Q9UBU7 674 aaPredicted RBP21.61■■□□□ 1.05
CLK3-207ENST00000562389 ZNF652Q9Y2D9 606 aa21.61■■□□□ 1.05
CLK3-207ENST00000562389 CD2APQ9Y5K6 639 aa21.61■■□□□ 1.05
CLK3-207ENST00000562389 C10orf71Q711Q0 1435 aa21.61■■□□□ 1.05
CLK3-207ENST00000562389 MAP3K15Q6ZN16 1313 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 ERVV-1B6SEH8 477 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 TBC1D9BQ66K14 1250 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 KIF6Q6ZMV9 814 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 TTLL7Q6ZT98 887 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 KLHL34Q8N239 644 aa21.6■■□□□ 1.05
CLK3-207ENST00000562389 TWISTNBQ3B726 338 aaPredicted RBP21.59■■□□□ 1.05
CLK3-207ENST00000562389 CCDC30Q5VVM6 783 aa21.58■■□□□ 1.05
CLK3-207ENST00000562389 CARMIL3Q8ND23 1372 aa21.58■■□□□ 1.04
CLK3-207ENST00000562389 KIAA1551Q9HCM1 1747 aa21.58■■□□□ 1.04
CLK3-207ENST00000562389 E9PSI1 815 aa21.57■■□□□ 1.04
CLK3-207ENST00000562389 EXOSC9Q06265 439 aaKnown RBP21.57■■□□□ 1.04
CLK3-207ENST00000562389 HLFQ16534 295 aa21.57■■□□□ 1.04
CLK3-207ENST00000562389 BICDL1Q6ZP65 573 aa21.57■■□□□ 1.04
CLK3-207ENST00000562389 HYPKQ9NX55 129 aa21.57■■□□□ 1.04
CLK3-207ENST00000562389 ANKRD36CQ5JPF3 1778 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 ATP10DQ9P241 1426 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 CACNA1FO60840 1977 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 SERPINB2P05120 415 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 COPS6Q7L5N1 327 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 XAGE3Q8WTP9 111 aa21.56■■□□□ 1.04
CLK3-207ENST00000562389 NLGN2Q8NFZ4 835 aa21.55■■□□□ 1.04
CLK3-207ENST00000562389 SETDB2Q96T68 719 aa21.55■■□□□ 1.04
CLK3-207ENST00000562389 ZBTB3Q9H5J0 574 aa21.55■■□□□ 1.04
CLK3-207ENST00000562389 SLFN5Q08AF3 891 aa21.54■■□□□ 1.04
CLK3-207ENST00000562389 AIMP1Q12904 312 aaKnown RBP21.54■■□□□ 1.04
CLK3-207ENST00000562389 GIGYF2Q6Y7W6 1299 aaKnown RBP21.54■■□□□ 1.04
CLK3-207ENST00000562389 VAMP4O75379 141 aa21.53■■□□□ 1.04
CLK3-207ENST00000562389 NIP7Q9Y221 180 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLK3-207ENST00000562389 ARFGEF2Q9Y6D5 1785 aa21.53■■□□□ 1.04
CLK3-207ENST00000562389 N4BP2Q86UW6 1770 aaPredicted RBP21.52■■□□□ 1.04
CLK3-207ENST00000562389 PXDNLA1KZ92 1463 aa21.52■■□□□ 1.03
CLK3-207ENST00000562389 TGFB2P61812 414 aa21.51■■□□□ 1.03
CLK3-207ENST00000562389 STK31Q9BXU1 1019 aa21.51■■□□□ 1.03
CLK3-207ENST00000562389 ANKRD31Q8N7Z5 1873 aa21.51■■□□□ 1.03
CLK3-207ENST00000562389 HNRNPUQ00839 825 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLK3-207ENST00000562389 TRMT2AQ8IZ69 625 aaKnown RBP21.5■■□□□ 1.03
CLK3-207ENST00000562389 PLBD2Q8NHP8 589 aa21.5■■□□□ 1.03
CLK3-207ENST00000562389 CDCA7LQ96GN5 454 aa21.5■■□□□ 1.03
CLK3-207ENST00000562389 PHAXQ9H814 394 aaKnown RBP21.5■■□□□ 1.03
CLK3-207ENST00000562389 BRCA1P38398 1863 aaKnown RBP21.49■■□□□ 1.03
CLK3-207ENST00000562389 IBTKQ9P2D0 1353 aaPredicted RBP21.49■■□□□ 1.03
CLK3-207ENST00000562389 HSP90AB3PQ58FF7 597 aa21.49■■□□□ 1.03
CLK3-207ENST00000562389 PRR5LQ6MZQ0 368 aa21.49■■□□□ 1.03
CLK3-207ENST00000562389 ANKRD13DQ6ZTN6 518 aa21.49■■□□□ 1.03
CLK3-207ENST00000562389 ZNF34Q8IZ26 560 aa21.49■■□□□ 1.03
CLK3-207ENST00000562389 CNBD1Q8NA66 436 aa21.49■■□□□ 1.03
CLK3-207ENST00000562389 DLEC1Q9Y238 1755 aa21.48■■□□□ 1.03
CLK3-207ENST00000562389 NBPF5PQ86XG9 351 aaPredicted RBP21.48■■□□□ 1.03
CLK3-207ENST00000562389 UBN2Q6ZU65 1347 aa21.48■■□□□ 1.03
CLK3-207ENST00000562389 TCERG1O14776 1098 aaKnown RBP21.47■■□□□ 1.03
CLK3-207ENST00000562389 GPTP24298 496 aa21.46■■□□□ 1.03
CLK3-207ENST00000562389 ST5P78524 1137 aa21.46■■□□□ 1.03
CLK3-207ENST00000562389 TCIRG1Q13488 830 aa21.46■■□□□ 1.03
CLK3-207ENST00000562389 PARP10Q53GL7 1025 aa21.46■■□□□ 1.03
CLK3-207ENST00000562389 NPHP1O15259 732 aa21.45■■□□□ 1.02
CLK3-207ENST00000562389 DDX58O95786 925 aaKnown RBP21.45■■□□□ 1.02
CLK3-207ENST00000562389 SLC4A2P04920 1241 aa21.45■■□□□ 1.02
CLK3-207ENST00000562389 TPTE2Q6XPS3 522 aa21.45■■□□□ 1.02
CLK3-207ENST00000562389 NYXQ9GZU5 481 aa21.45■■□□□ 1.02
CLK3-207ENST00000562389 DCAF8L1A6NGE4 600 aa21.44■■□□□ 1.02
CLK3-207ENST00000562389 DPEP1P16444 411 aa21.44■■□□□ 1.02
CLK3-207ENST00000562389 BRIP1Q9BX63 1249 aa21.44■■□□□ 1.02
CLK3-207ENST00000562389 ZBED9Q6R2W3 1325 aa21.44■■□□□ 1.02
CLK3-207ENST00000562389 COL11A2P13942 1736 aaPredicted RBP21.43■■□□□ 1.02
CLK3-207ENST00000562389 A0A0G2JLW4 131 aa21.43■■□□□ 1.02
CLK3-207ENST00000562389 SUSD4Q5VX71 490 aa21.43■■□□□ 1.02
CLK3-207ENST00000562389 PPP1R42Q7Z4L9 355 aa21.43■■□□□ 1.02
CLK3-207ENST00000562389 RIC3Q7Z5B4 369 aa21.43■■□□□ 1.02
CLK3-207ENST00000562389 FAM177BA6PVY3 158 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 NTSR2O95665 410 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 KCNA3P22001 575 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 PDE6BP35913 854 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 FLIIQ13045 1269 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 RIC1Q4ADV7 1423 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 G2E3Q7L622 706 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 CCDC24Q8N4L8 307 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 ZNF428Q96B54 188 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 ISCA1Q9BUE6 129 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 PDZRN3Q9UPQ7 1066 aa21.42■■□□□ 1.02
CLK3-207ENST00000562389 RNF123Q5XPI4 1314 aa21.41■■□□□ 1.02
CLK3-207ENST00000562389 CT47B1P0C2W7 299 aaPredicted RBP21.41■■□□□ 1.02
CLK3-207ENST00000562389 KSR2Q6VAB6 950 aa21.41■■□□□ 1.02
CLK3-207ENST00000562389 NLRP10Q86W26 655 aa21.41■■□□□ 1.02
CLK3-207ENST00000562389 ARFGEF1Q9Y6D6 1849 aa21.41■■□□□ 1.02
CLK3-207ENST00000562389 TNRC6CQ9HCJ0 1690 aaKnown RBP21.4■■□□□ 1.02
CLK3-207ENST00000562389 ADCY9O60503 1353 aa21.4■■□□□ 1.02
CLK3-207ENST00000562389 GTF2E1P29083 439 aaPredicted RBP21.4■■□□□ 1.02
CLK3-207ENST00000562389 CHRNA5P30532 468 aa21.4■■□□□ 1.02
CLK3-207ENST00000562389 GPR162Q16538 588 aa21.4■■□□□ 1.02
CLK3-207ENST00000562389 ABCC12Q96J65 1359 aa21.39■■□□□ 1.02
CLK3-207ENST00000562389 TRIM28Q13263 835 aaKnown RBP21.39■■□□□ 1.01
CLK3-207ENST00000562389 NUTM1Q86Y26 1132 aa21.39■■□□□ 1.01
CLK3-207ENST00000562389 C2CD5Q86YS7 1000 aa21.39■■□□□ 1.01
CLK3-207ENST00000562389 METTL22Q9BUU2 404 aaPredicted RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms