RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 VTI1AQ96AJ9 217 aa11.48□□□□□ -0.57
SMG1-204ENST00000561940 HSH2DQ96JZ2 352 aa11.48□□□□□ -0.57
SMG1-204ENST00000561940 PCDHGC4Q9Y5F7 938 aa11.48□□□□□ -0.57
SMG1-204ENST00000561940 KHNYNO15037 678 aaKnown RBP11.47□□□□□ -0.57
SMG1-204ENST00000561940 MX2P20592 715 aa11.47□□□□□ -0.57
SMG1-204ENST00000561940 HIRAP54198 1017 aaPredicted RBP11.47□□□□□ -0.57
SMG1-204ENST00000561940 INSM1Q01101 510 aaPredicted RBP11.47□□□□□ -0.57
SMG1-204ENST00000561940 C1orf53Q5VUE5 145 aa11.47□□□□□ -0.57
SMG1-204ENST00000561940 POTEAQ6S8J7 498 aa11.47□□□□□ -0.57
SMG1-204ENST00000561940 ZNF280CQ8ND82 737 aa11.47□□□□□ -0.57
SMG1-204ENST00000561940 CFHR5Q9BXR6 569 aa11.47□□□□□ -0.57
SMG1-204ENST00000561940 FKBP5Q13451 457 aaPredicted RBP11.46□□□□□ -0.57
SMG1-204ENST00000561940 FIGNL1Q6PIW4 674 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 ZSCAN1Q8NBB4 408 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 MKNK1Q9BUB5 465 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 MBIPQ9NS73 344 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 SLAIN2Q9P270 581 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 PHF24Q9UPV7 400 aa11.46□□□□□ -0.57
SMG1-204ENST00000561940 ADAMTS2O95450 1211 aa11.45□□□□□ -0.58
SMG1-204ENST00000561940 LORP23490 312 aaPredicted RBP11.45□□□□□ -0.58
SMG1-204ENST00000561940 CTBSQ01459 385 aa11.45□□□□□ -0.58
SMG1-204ENST00000561940 NDFIP2Q9NV92 336 aa11.45□□□□□ -0.58
SMG1-204ENST00000561940 IGF1RP08069 1367 aa11.44□□□□□ -0.58
SMG1-204ENST00000561940 OCLNQ16625 522 aa11.44□□□□□ -0.58
SMG1-204ENST00000561940 WHAMMQ8TF30 809 aa11.44□□□□□ -0.58
SMG1-204ENST00000561940 SUSD3Q96L08 255 aa11.44□□□□□ -0.58
SMG1-204ENST00000561940 HCN2Q9UL51 889 aa11.44□□□□□ -0.58
SMG1-204ENST00000561940 ATXN7L1Q9ULK2 861 aaPredicted RBP11.44□□□□□ -0.58
SMG1-204ENST00000561940 FOXO3O43524 673 aa11.43□□□□□ -0.58
SMG1-204ENST00000561940 MAPTP10636 758 aaKnown RBP11.43□□□□□ -0.58
SMG1-204ENST00000561940 FGFR3P22607 806 aa11.43□□□□□ -0.58
SMG1-204ENST00000561940 TNP2Q05952 138 aa11.43□□□□□ -0.58
SMG1-204ENST00000561940 CAPN12Q6ZSI9 719 aa11.43□□□□□ -0.58
SMG1-204ENST00000561940 CD33P20138 364 aa11.42□□□□□ -0.58
SMG1-204ENST00000561940 SRSF11Q05519 484 aaKnown RBP11.42□□□□□ -0.58
SMG1-204ENST00000561940 AEBP1Q8IUX7 1158 aa11.42□□□□□ -0.58
SMG1-204ENST00000561940 STRN4Q9NRL3 753 aa11.42□□□□□ -0.58
SMG1-204ENST00000561940 KLK14Q9P0G3 267 aa11.42□□□□□ -0.58
SMG1-204ENST00000561940 C2CD2LO14523 706 aa11.41□□□□□ -0.58
SMG1-204ENST00000561940 CLP1Q92989 425 aaKnown RBP11.41□□□□□ -0.58
SMG1-204ENST00000561940 QTRT2Q9H974 415 aaKnown RBP11.41□□□□□ -0.58
SMG1-204ENST00000561940 CXXC1Q9P0U4 656 aaPredicted RBP11.41□□□□□ -0.58
SMG1-204ENST00000561940 BMP4P12644 408 aa11.4□□□□□ -0.58
SMG1-204ENST00000561940 NAA30Q147X3 362 aaPredicted RBP11.4□□□□□ -0.58
SMG1-204ENST00000561940 RTN1Q16799 776 aa11.4□□□□□ -0.58
SMG1-204ENST00000561940 CEP63Q96MT8 703 aa11.4□□□□□ -0.58
SMG1-204ENST00000561940 ANKIB1Q9P2G1 1089 aa11.4□□□□□ -0.58
SMG1-204ENST00000561940 TMEM88BA6NKF7 163 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 SLURP2P0DP57 97 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 ATP2B4P23634 1241 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 SCNN1AP37088 669 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 DGKZQ13574 1117 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 GRIN2CQ14957 1233 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 LYPD4Q6UWN0 246 aa11.39□□□□□ -0.59
SMG1-204ENST00000561940 GPC6Q9Y625 555 aaPredicted RBP11.39□□□□□ -0.59
SMG1-204ENST00000561940 ZBTB7CA1YPR0 619 aa11.38□□□□□ -0.59
SMG1-204ENST00000561940 SFSWAPQ12872 951 aaKnown RBP11.38□□□□□ -0.59
SMG1-204ENST00000561940 SAMD5Q5TGI4 173 aa11.38□□□□□ -0.59
SMG1-204ENST00000561940 LRFN2Q9ULH4 789 aa11.38□□□□□ -0.59
SMG1-204ENST00000561940 NSFL1CQ9UNZ2 370 aaKnown RBP11.38□□□□□ -0.59
SMG1-204ENST00000561940 USTQ9Y2C2 406 aa11.38□□□□□ -0.59
SMG1-204ENST00000561940 FAM157BP0CG42 384 aa11.37□□□□□ -0.59
SMG1-204ENST00000561940 ZNF385CQ66K41 422 aaPredicted RBP11.37□□□□□ -0.59
SMG1-204ENST00000561940 SVOPQ8N4V2 548 aa11.37□□□□□ -0.59
SMG1-204ENST00000561940 SAP130Q9H0E3 1048 aa11.37□□□□□ -0.59
SMG1-204ENST00000561940 BCS1LQ9Y276 419 aa11.37□□□□□ -0.59
SMG1-204ENST00000561940 COX20Q5RI15 118 aa11.36□□□□□ -0.59
SMG1-204ENST00000561940 ACDQ96AP0 544 aa11.36□□□□□ -0.59
SMG1-204ENST00000561940 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.36□□□□□ -0.59
SMG1-204ENST00000561940 MARK1Q9P0L2 795 aa11.36□□□□□ -0.59
SMG1-204ENST00000561940 BTLAQ7Z6A9 289 aa11.35□□□□□ -0.59
SMG1-204ENST00000561940 KCTD17Q8N5Z5 321 aa11.35□□□□□ -0.59
SMG1-204ENST00000561940 BRD7Q9NPI1 651 aa11.35□□□□□ -0.59
SMG1-204ENST00000561940 EFSO43281 561 aa11.34□□□□□ -0.59
SMG1-204ENST00000561940 CELA2BP08218 269 aaPredicted RBP11.34□□□□□ -0.59
SMG1-204ENST00000561940 MAP2K3P46734 347 aa11.34□□□□□ -0.59
SMG1-204ENST00000561940 C11orf91Q3C1V1 193 aa11.34□□□□□ -0.59
SMG1-204ENST00000561940 TYRO3Q06418 890 aa11.33□□□□□ -0.6
SMG1-204ENST00000561940 OXCT2Q9BYC2 517 aaPredicted RBP11.33□□□□□ -0.6
SMG1-204ENST00000561940 SEPT3Q9UH03 358 aa11.33□□□□□ -0.6
SMG1-204ENST00000561940 HIF1AQ16665 826 aa11.32□□□□□ -0.6
SMG1-204ENST00000561940 IFT43Q96FT9 208 aa11.32□□□□□ -0.6
SMG1-204ENST00000561940 MYO19Q96H55 970 aa11.32□□□□□ -0.6
SMG1-204ENST00000561940 PRR12Q9ULL5 1215 aa11.32□□□□□ -0.6
SMG1-204ENST00000561940 TGFBR3LH3BV60 316 aa11.31□□□□□ -0.6
SMG1-204ENST00000561940 PCBP4P57723 403 aaKnown RBP11.31□□□□□ -0.6
SMG1-204ENST00000561940 C16orf46Q6P387 395 aa11.31□□□□□ -0.6
SMG1-204ENST00000561940 RAB44Q7Z6P3 723 aaPredicted RBP11.31□□□□□ -0.6
SMG1-204ENST00000561940 SLC30A3Q99726 388 aa11.31□□□□□ -0.6
SMG1-204ENST00000561940 STK17AQ9UEE5 414 aa11.31□□□□□ -0.6
SMG1-204ENST00000561940 PDE4CQ08493 712 aa11.3□□□□□ -0.6
SMG1-204ENST00000561940 C1orf229Q6ZS94 237 aaPredicted RBP11.3□□□□□ -0.6
SMG1-204ENST00000561940 DMGDHQ9UI17 866 aaKnown RBP11.3□□□□□ -0.6
SMG1-204ENST00000561940 GGA1Q9UJY5 639 aa11.3□□□□□ -0.6
SMG1-204ENST00000561940 KCNH4Q9UQ05 1017 aa11.3□□□□□ -0.6
SMG1-204ENST00000561940 DNMT3AQ9Y6K1 912 aaPredicted RBP11.3□□□□□ -0.6
SMG1-204ENST00000561940 NEURL1BA8MQ27 555 aa11.29□□□□□ -0.6
SMG1-204ENST00000561940 PTCD1O75127 700 aaKnown RBP11.29□□□□□ -0.6
SMG1-204ENST00000561940 BCRP11274 1271 aa11.29□□□□□ -0.6
SMG1-204ENST00000561940 SSFA2P28290 1259 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms