RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KDM3BQ7LBC6 1761 aa25.33■■□□□ 1.65
VPS35-202ENST00000561713 FER1L6Q2WGJ9 1857 aa25.33■■□□□ 1.65
VPS35-202ENST00000561713 BTBD11A6QL63 1104 aa25.32■■□□□ 1.64
VPS35-202ENST00000561713 CAPN15O75808 1086 aa25.32■■□□□ 1.64
VPS35-202ENST00000561713 PIP4K2AP48426 406 aaPredicted RBP25.32■■□□□ 1.64
VPS35-202ENST00000561713 TNS4Q8IZW8 715 aa25.32■■□□□ 1.64
VPS35-202ENST00000561713 CNBD1Q8NA66 436 aa25.32■■□□□ 1.64
VPS35-202ENST00000561713 NPM2Q86SE8 214 aaKnown RBP25.31■■□□□ 1.64
VPS35-202ENST00000561713 TAOK3Q9H2K8 898 aa25.31■■□□□ 1.64
VPS35-202ENST00000561713 DICER1Q9UPY3 1922 aaKnown RBP25.3■■□□□ 1.64
VPS35-202ENST00000561713 PRAMEF22A3QJZ6 481 aa25.3■■□□□ 1.64
VPS35-202ENST00000561713 NPHP1O15259 732 aa25.3■■□□□ 1.64
VPS35-202ENST00000561713 HSPA1AP0DMV8 641 aaKnown RBP25.3■■□□□ 1.64
VPS35-202ENST00000561713 HSPA1BP0DMV9 641 aaKnown RBP25.3■■□□□ 1.64
VPS35-202ENST00000561713 SLX4Q8IY92 1834 aa25.29■■□□□ 1.64
VPS35-202ENST00000561713 SRGNP10124 158 aa25.29■■□□□ 1.64
VPS35-202ENST00000561713 PRPF40BQ6NWY9 871 aaKnown RBP25.29■■□□□ 1.64
VPS35-202ENST00000561713 DZIP3Q86Y13 1208 aaKnown RBP25.29■■□□□ 1.64
VPS35-202ENST00000561713 CNKSR1Q969H4 720 aa25.29■■□□□ 1.64
VPS35-202ENST00000561713 LTBP3Q9NS15 1303 aa25.29■■□□□ 1.64
VPS35-202ENST00000561713 ST5P78524 1137 aa25.28■■□□□ 1.64
VPS35-202ENST00000561713 STYK1Q6J9G0 422 aa25.28■■□□□ 1.64
VPS35-202ENST00000561713 RTF1Q92541 710 aaKnown RBP25.28■■□□□ 1.64
VPS35-202ENST00000561713 USP16Q9Y5T5 823 aa25.28■■□□□ 1.64
VPS35-202ENST00000561713 DDNO94850 711 aaPredicted RBP25.27■■□□□ 1.64
VPS35-202ENST00000561713 POTEIP0CG38 1075 aa25.27■■□□□ 1.64
VPS35-202ENST00000561713 POTEJP0CG39 1038 aa25.27■■□□□ 1.64
VPS35-202ENST00000561713 MASTLQ96GX5 879 aa25.26■■□□□ 1.63
VPS35-202ENST00000561713 CHADLQ6NUI6 762 aa25.25■■□□□ 1.63
VPS35-202ENST00000561713 SOGA3Q5TF21 947 aa25.23■■□□□ 1.63
VPS35-202ENST00000561713 NBPF5PQ86XG9 351 aaPredicted RBP25.23■■□□□ 1.63
VPS35-202ENST00000561713 C7orf43Q8WVR3 580 aa25.22■■□□□ 1.63
VPS35-202ENST00000561713 CREBZFQ9NS37 354 aa25.22■■□□□ 1.63
VPS35-202ENST00000561713 ARFGEF2Q9Y6D5 1785 aa25.21■■□□□ 1.63
VPS35-202ENST00000561713 CLEC4GQ6UXB4 293 aa25.21■■□□□ 1.63
VPS35-202ENST00000561713 MIS18AQ9NYP9 233 aa25.21■■□□□ 1.63
VPS35-202ENST00000561713 MKRN1Q9UHC7 482 aaKnown RBP25.21■■□□□ 1.63
VPS35-202ENST00000561713 THUMPD2Q9BTF0 503 aaKnown RBP25.2■■□□□ 1.62
VPS35-202ENST00000561713 SNRPA1P09661 255 aaKnown RBP25.19■■□□□ 1.62
VPS35-202ENST00000561713 ZNF652Q9Y2D9 606 aa25.18■■□□□ 1.62
VPS35-202ENST00000561713 NBPF26B4DH59 902 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 NPR1P16066 1061 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 CCDC93Q567U6 631 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 NBPF10Q6P3W6 841 aaKnown RBP25.17■■□□□ 1.62
VPS35-202ENST00000561713 OLFM4Q6UX06 510 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 NBPF15Q8N660 670 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 PLEKHF1Q96S99 279 aa25.17■■□□□ 1.62
VPS35-202ENST00000561713 KLRG2A4D1S0 409 aaPredicted RBP25.16■■□□□ 1.62
VPS35-202ENST00000561713 IQCA1LA6NCM1 817 aa25.16■■□□□ 1.62
VPS35-202ENST00000561713 HTATSF1O43719 755 aaKnown RBP25.16■■□□□ 1.62
VPS35-202ENST00000561713 L3MBTL3Q96JM7 780 aaPredicted RBP25.16■■□□□ 1.62
VPS35-202ENST00000561713 ZNF277Q9NRM2 450 aaPredicted RBP25.16■■□□□ 1.62
VPS35-202ENST00000561713 NIP7Q9Y221 180 aaKnown RBP eCLIP25.16■■□□□ 1.62
VPS35-202ENST00000561713 NUP98P52948 1817 aa25.15■■□□□ 1.62
VPS35-202ENST00000561713 FAM177BA6PVY3 158 aa25.15■■□□□ 1.62
VPS35-202ENST00000561713 NEFMP07197 916 aa25.15■■□□□ 1.62
VPS35-202ENST00000561713 TPTE2Q6XPS3 522 aa25.15■■□□□ 1.62
VPS35-202ENST00000561713 TAF1DQ9H5J8 278 aaPredicted RBP25.15■■□□□ 1.62
VPS35-202ENST00000561713 FKBP4Q02790 459 aaKnown RBP eCLIP25.14■■□□□ 1.62
VPS35-202ENST00000561713 TAF7Q15545 349 aaPredicted RBP25.14■■□□□ 1.62
VPS35-202ENST00000561713 NFE2L2Q16236 605 aa25.14■■□□□ 1.62
VPS35-202ENST00000561713 LDHDQ86WU2 507 aa25.14■■□□□ 1.62
VPS35-202ENST00000561713 PASKQ96RG2 1323 aa25.13■■□□□ 1.61
VPS35-202ENST00000561713 ZNF541Q9H0D2 1346 aa25.13■■□□□ 1.61
VPS35-202ENST00000561713 MAPK8IP3Q9UPT6 1336 aa25.13■■□□□ 1.61
VPS35-202ENST00000561713 DDX10Q13206 875 aaKnown RBP25.12■■□□□ 1.61
VPS35-202ENST00000561713 HLFQ16534 295 aa25.12■■□□□ 1.61
VPS35-202ENST00000561713 SCN4AP35499 1836 aa25.12■■□□□ 1.61
VPS35-202ENST00000561713 CNTNAP1P78357 1384 aa25.11■■□□□ 1.61
VPS35-202ENST00000561713 RGL2O15211 777 aa25.1■■□□□ 1.61
VPS35-202ENST00000561713 EAPPQ56P03 285 aaPredicted RBP25.1■■□□□ 1.61
VPS35-202ENST00000561713 RTKN2Q8IZC4 609 aa25.1■■□□□ 1.61
VPS35-202ENST00000561713 ITGBL1O95965 494 aaPredicted RBP25.09■■□□□ 1.61
VPS35-202ENST00000561713 HACL1Q9UJ83 578 aa25.08■■□□□ 1.61
VPS35-202ENST00000561713 FOXN1O15353 648 aa25.07■■□□□ 1.6
VPS35-202ENST00000561713 GTF2E1P29083 439 aaPredicted RBP25.07■■□□□ 1.6
VPS35-202ENST00000561713 ALDH1B1P30837 517 aa25.07■■□□□ 1.6
VPS35-202ENST00000561713 SYNE4Q8N205 404 aa25.07■■□□□ 1.6
VPS35-202ENST00000561713 NGEFQ8N5V2 710 aa25.07■■□□□ 1.6
VPS35-202ENST00000561713 CLEC11AQ9Y240 323 aa25.07■■□□□ 1.6
VPS35-202ENST00000561713 TMEM88BA6NKF7 163 aa25.06■■□□□ 1.6
VPS35-202ENST00000561713 EPHX2P34913 555 aa25.06■■□□□ 1.6
VPS35-202ENST00000561713 IARSP41252 1262 aaKnown RBP25.06■■□□□ 1.6
VPS35-202ENST00000561713 RALBP1Q15311 655 aa25.06■■□□□ 1.6
VPS35-202ENST00000561713 FZD9O00144 591 aa25.05■■□□□ 1.6
VPS35-202ENST00000561713 VEGFBP49765 207 aa25.05■■□□□ 1.6
VPS35-202ENST00000561713 EIF4A1P60842 406 aaKnown RBP25.05■■□□□ 1.6
VPS35-202ENST00000561713 RNF123Q5XPI4 1314 aa25.05■■□□□ 1.6
VPS35-202ENST00000561713 NUTM1Q86Y26 1132 aa25.04■■□□□ 1.6
VPS35-202ENST00000561713 ABCC12Q96J65 1359 aa25.04■■□□□ 1.6
VPS35-202ENST00000561713 ADAMTSL1Q8N6G6 1762 aa25.03■■□□□ 1.6
VPS35-202ENST00000561713 CCDC146Q8IYE0 955 aa25.03■■□□□ 1.6
VPS35-202ENST00000561713 PNISRQ8TF01 805 aaKnown RBP25.03■■□□□ 1.6
VPS35-202ENST00000561713 RRP7AQ9Y3A4 280 aaKnown RBP25.03■■□□□ 1.6
VPS35-202ENST00000561713 MYBBP1AQ9BQG0 1328 aaKnown RBP25.03■■□□□ 1.6
VPS35-202ENST00000561713 CRY2Q49AN0 593 aa25.02■■□□□ 1.6
VPS35-202ENST00000561713 MAP1SQ66K74 1059 aaPredicted RBP25.02■■□□□ 1.6
VPS35-202ENST00000561713 SNED1Q8TER0 1413 aa25.02■■□□□ 1.6
VPS35-202ENST00000561713 ANKRD36CQ5JPF3 1778 aa25.01■■□□□ 1.59
VPS35-202ENST00000561713 MYL6BP14649 208 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms