RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 STK32BQ9NY57 414 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 CCNL1Q9UK58 526 aaPredicted RBP8.17□□□□□ -1.1
SPG11-221ENST00000560299 CNTNAP4Q9C0A0 1308 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 UBR2Q8IWV8 1755 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 TCERG1O14776 1098 aaKnown RBP8.16□□□□□ -1.1
SPG11-221ENST00000560299 PTCD1O75127 700 aaKnown RBP8.16□□□□□ -1.1
SPG11-221ENST00000560299 STARD3NLO95772 234 aa8.16□□□□□ -1.1
SPG11-221ENST00000560299 SSFA2P28290 1259 aa8.16□□□□□ -1.1
SPG11-221ENST00000560299 ERBB4Q15303 1308 aa8.16□□□□□ -1.1
SPG11-221ENST00000560299 NPM2Q86SE8 214 aaKnown RBP8.16□□□□□ -1.1
SPG11-221ENST00000560299 NECTIN2Q92692 538 aa8.16□□□□□ -1.1
SPG11-221ENST00000560299 DDX21Q9NR30 783 aaKnown RBP eCLIP8.16□□□□□ -1.1
SPG11-221ENST00000560299 ASAP1Q9ULH1 1129 aa8.16□□□□□ -1.1
SPG11-221ENST00000560299 TAF1LQ8IZX4 1826 aa8.15□□□□□ -1.1
SPG11-221ENST00000560299 DDX58O95786 925 aaKnown RBP8.15□□□□□ -1.1
SPG11-221ENST00000560299 TRIM27P14373 513 aa8.15□□□□□ -1.1
SPG11-221ENST00000560299 FLIIQ13045 1269 aa8.15□□□□□ -1.1
SPG11-221ENST00000560299 FKBP5Q13451 457 aaPredicted RBP8.15□□□□□ -1.1
SPG11-221ENST00000560299 CLUAP1Q96AJ1 413 aa8.15□□□□□ -1.1
SPG11-221ENST00000560299 PPP4R2Q9NY27 417 aa8.15□□□□□ -1.1
SPG11-221ENST00000560299 CASZ1Q86V15 1759 aa8.15□□□□□ -1.11
SPG11-221ENST00000560299 COL5A3P25940 1745 aaPredicted RBP8.15□□□□□ -1.11
SPG11-221ENST00000560299 KCPQ6ZWJ8 1503 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 MVPQ14764 893 aaKnown RBP8.14□□□□□ -1.11
SPG11-221ENST00000560299 ITPRIPQ8IWB1 547 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 CRBNQ96SW2 442 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 MTFR1LQ9H019 292 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 CHPF2Q9P2E5 772 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 DDX19BQ9UMR2 479 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 USP16Q9Y5T5 823 aa8.14□□□□□ -1.11
SPG11-221ENST00000560299 C4BP0C0L5 1744 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 RPS6KA4O75676 772 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 CCT4P50991 539 aaKnown RBP8.13□□□□□ -1.11
SPG11-221ENST00000560299 C20orf194Q5TEA3 1177 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 EXOC6Q8TAG9 804 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 PANK1Q8TE04 598 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 SLC4A9Q96Q91 983 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 ANO8Q9HCE9 1232 aaPredicted RBP8.13□□□□□ -1.11
SPG11-221ENST00000560299 COG6Q9Y2V7 657 aa8.13□□□□□ -1.11
SPG11-221ENST00000560299 PRAMEF22A3QJZ6 481 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 POTEMA6NI47 508 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 MYL6BP14649 208 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 ATP6V1AP38606 617 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 INTS3Q68E01 1043 aaKnown RBP8.12□□□□□ -1.11
SPG11-221ENST00000560299 SLC4A10Q6U841 1118 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 CCDC136Q96JN2 1154 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 SGIP1Q9BQI5 828 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 HDAC5Q9UQL6 1122 aa8.12□□□□□ -1.11
SPG11-221ENST00000560299 UBR3Q6ZT12 1888 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 ABCC4O15439 1325 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 PNPLA7Q6ZV29 1317 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 CYP19A1P11511 503 aaPredicted RBP8.11□□□□□ -1.11
SPG11-221ENST00000560299 RLBP1P12271 317 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 NEXNQ0ZGT2 675 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 AIMP1Q12904 312 aaKnown RBP8.11□□□□□ -1.11
SPG11-221ENST00000560299 ITPK1Q13572 414 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 R3HDM1Q15032 1099 aaKnown RBP8.11□□□□□ -1.11
SPG11-221ENST00000560299 KSR2Q6VAB6 950 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 G2E3Q7L622 706 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 RIC3Q7Z5B4 369 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 DNAJC10Q8IXB1 793 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 TMEM57Q8N5G2 664 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 DNAAF4Q8WXU2 420 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 OTUD5Q96G74 571 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 PHAXQ9H814 394 aaKnown RBP8.11□□□□□ -1.11
SPG11-221ENST00000560299 SPON1Q9HCB6 807 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 LAMB4A4D0S4 1761 aa8.11□□□□□ -1.11
SPG11-221ENST00000560299 TJP1Q07157 1748 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 PI4KAP2A4QPH2 592 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 A1BGP04217 495 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 IL6STP40189 918 aaPredicted RBP8.1□□□□□ -1.11
SPG11-221ENST00000560299 PDIA6Q15084 440 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 ZNF827Q17R98 1081 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 ANKRD13DQ6ZTN6 518 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 COPS6Q7L5N1 327 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 NLGN1Q8N2Q7 840 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 PI4KAP1Q8N8J0 262 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 ZNF579Q8NAF0 562 aaKnown RBP8.1□□□□□ -1.11
SPG11-221ENST00000560299 LINC00116Q8NCU8 138 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 XAGE3Q8WTP9 111 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 AK7Q96M32 723 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 SRCIN1Q9C0H9 1055 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 TFCP2L1Q9NZI6 479 aa8.1□□□□□ -1.11
SPG11-221ENST00000560299 RTCBQ9Y3I0 505 aaKnown RBP8.1□□□□□ -1.11
SPG11-221ENST00000560299 A0A087WZG4 1122 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 ANXA1P04083 346 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 GNAI3P08754 354 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 PTGER2P43116 358 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 EIF5P55010 431 aaKnown RBP8.09□□□□□ -1.11
SPG11-221ENST00000560299 PROSER3Q2NL68 480 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 TRAPPC3LQ5T215 181 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 INTS5Q6P9B9 1019 aaKnown RBP8.09□□□□□ -1.11
SPG11-221ENST00000560299 KIF6Q6ZMV9 814 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 PELP1Q8IZL8 1130 aaKnown RBP8.09□□□□□ -1.11
SPG11-221ENST00000560299 PLBD2Q8NHP8 589 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 CCDC87Q9NVE4 849 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 TNNQ9UQP3 1299 aa8.09□□□□□ -1.11
SPG11-221ENST00000560299 MYH14Q7Z406 1995 aaKnown RBP8.08□□□□□ -1.12
SPG11-221ENST00000560299 PXDNLA1KZ92 1463 aa8.08□□□□□ -1.12
SPG11-221ENST00000560299 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms