RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 H0YIN7 160 aa15.52■□□□□ 0.08
USP3-214ENST00000559718 PRR5LQ6MZQ0 368 aa15.52■□□□□ 0.08
USP3-214ENST00000559718 DZIP3Q86Y13 1208 aaKnown RBP15.51■□□□□ 0.07
USP3-214ENST00000559718 SNRPA1P09661 255 aaKnown RBP15.5■□□□□ 0.07
USP3-214ENST00000559718 NPM2Q86SE8 214 aaKnown RBP15.5■□□□□ 0.07
USP3-214ENST00000559718 PIP4P2Q8N4L2 257 aa15.5■□□□□ 0.07
USP3-214ENST00000559718 ZNF622Q969S3 477 aaKnown RBP eCLIP15.5■□□□□ 0.07
USP3-214ENST00000559718 BRIP1Q9BX63 1249 aa15.5■□□□□ 0.07
USP3-214ENST00000559718 RRAGCQ9HB90 399 aa15.5■□□□□ 0.07
USP3-214ENST00000559718 MIS18AQ9NYP9 233 aa15.5■□□□□ 0.07
USP3-214ENST00000559718 KDM2BQ8NHM5 1336 aa15.49■□□□□ 0.07
USP3-214ENST00000559718 NFKBIEO00221 500 aa15.49■□□□□ 0.07
USP3-214ENST00000559718 LMNB1P20700 586 aa15.49■□□□□ 0.07
USP3-214ENST00000559718 SETDB2Q96T68 719 aa15.49■□□□□ 0.07
USP3-214ENST00000559718 BCORQ6W2J9 1755 aa15.49■□□□□ 0.07
USP3-214ENST00000559718 COL11A2P13942 1736 aaPredicted RBP15.48■□□□□ 0.07
USP3-214ENST00000559718 NBPF26B4DH59 902 aa15.48■□□□□ 0.07
USP3-214ENST00000559718 HTATSF1O43719 755 aaKnown RBP15.48■□□□□ 0.07
USP3-214ENST00000559718 PDE6BP35913 854 aa15.48■□□□□ 0.07
USP3-214ENST00000559718 APLP1P51693 650 aa15.48■□□□□ 0.07
USP3-214ENST00000559718 NBPF10Q6P3W6 841 aaKnown RBP15.48■□□□□ 0.07
USP3-214ENST00000559718 NBPF15Q8N660 670 aa15.48■□□□□ 0.07
USP3-214ENST00000559718 CNBD1Q8NA66 436 aa15.48■□□□□ 0.07
USP3-214ENST00000559718 RBM46Q8TBY0 533 aaKnown RBP15.48■□□□□ 0.07
USP3-214ENST00000559718 C21orf2O43822 256 aa15.47■□□□□ 0.07
USP3-214ENST00000559718 TAF7Q15545 349 aaPredicted RBP15.47■□□□□ 0.07
USP3-214ENST00000559718 C16orf71Q8IYS4 520 aaPredicted RBP15.47■□□□□ 0.07
USP3-214ENST00000559718 CCDC88AQ3V6T2 1871 aa15.46■□□□□ 0.07
USP3-214ENST00000559718 NPHP1O15259 732 aa15.46■□□□□ 0.07
USP3-214ENST00000559718 PLEKHF1Q96S99 279 aa15.46■□□□□ 0.07
USP3-214ENST00000559718 THUMPD2Q9BTF0 503 aaKnown RBP15.46■□□□□ 0.07
USP3-214ENST00000559718 SSUH2Q9Y2M2 353 aa15.46■□□□□ 0.07
USP3-214ENST00000559718 DLG5Q8TDM6 1919 aa15.45■□□□□ 0.06
USP3-214ENST00000559718 ST5P78524 1137 aa15.45■□□□□ 0.06
USP3-214ENST00000559718 HTRA3P83110 453 aa15.45■□□□□ 0.06
USP3-214ENST00000559718 TNRC6CQ9HCJ0 1690 aaKnown RBP15.44■□□□□ 0.06
USP3-214ENST00000559718 ZC3H4Q9UPT8 1303 aaKnown RBP15.44■□□□□ 0.06
USP3-214ENST00000559718 GLTPD2A6NH11 291 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 SRGNP10124 158 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 CLEC4GQ6UXB4 293 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 NBPF5PQ86XG9 351 aaPredicted RBP15.44■□□□□ 0.06
USP3-214ENST00000559718 DNAJC5GQ8N7S2 189 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 PDZRN3Q9UPQ7 1066 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 SLX4Q8IY92 1834 aa15.44■□□□□ 0.06
USP3-214ENST00000559718 TIAM2Q8IVF5 1701 aa15.43■□□□□ 0.06
USP3-214ENST00000559718 HLFQ16534 295 aa15.43■□□□□ 0.06
USP3-214ENST00000559718 STYK1Q6J9G0 422 aa15.43■□□□□ 0.06
USP3-214ENST00000559718 PRPF40BQ6NWY9 871 aaKnown RBP15.43■□□□□ 0.06
USP3-214ENST00000559718 CACNA1SQ13698 1873 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 FER1L6Q2WGJ9 1857 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 FAM177BA6PVY3 158 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 NEFMP07197 916 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 FXR2P51116 673 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP3-214ENST00000559718 FSTL1Q12841 308 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 NFE2L2Q16236 605 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 NGEFQ8N5V2 710 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 CNKSR1Q969H4 720 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 MASTLQ96GX5 879 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 NIP7Q9Y221 180 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP3-214ENST00000559718 ZNF652Q9Y2D9 606 aa15.42■□□□□ 0.06
USP3-214ENST00000559718 ERFEQ4G0M1 354 aa15.41■□□□□ 0.06
USP3-214ENST00000559718 WDR90Q96KV7 1748 aa15.4■□□□□ 0.06
USP3-214ENST00000559718 LAMB4A4D0S4 1761 aa15.4■□□□□ 0.06
USP3-214ENST00000559718 KDM3BQ7LBC6 1761 aa15.4■□□□□ 0.06
USP3-214ENST00000559718 POTECB2RU33 542 aa15.4■□□□□ 0.06
USP3-214ENST00000559718 VEGFAP15692 232 aaPredicted RBP15.4■□□□□ 0.06
USP3-214ENST00000559718 EIF4A1P60842 406 aaKnown RBP15.4■□□□□ 0.06
USP3-214ENST00000559718 SPDYE1Q8NFV5 336 aaPredicted RBP15.4■□□□□ 0.06
USP3-214ENST00000559718 TAOK3Q9H2K8 898 aa15.4■□□□□ 0.06
USP3-214ENST00000559718 SMC1BQ8NDV3 1235 aa15.39■□□□□ 0.05
USP3-214ENST00000559718 PNISRQ8TF01 805 aaKnown RBP15.39■□□□□ 0.05
USP3-214ENST00000559718 C7orf43Q8WVR3 580 aa15.39■□□□□ 0.05
USP3-214ENST00000559718 LTBP3Q9NS15 1303 aa15.39■□□□□ 0.05
USP3-214ENST00000559718 KLRG2A4D1S0 409 aaPredicted RBP15.38■□□□□ 0.05
USP3-214ENST00000559718 OLFM4Q6UX06 510 aa15.38■□□□□ 0.05
USP3-214ENST00000559718 TPTE2Q6XPS3 522 aa15.38■□□□□ 0.05
USP3-214ENST00000559718 TTLL7Q6ZT98 887 aa15.38■□□□□ 0.05
USP3-214ENST00000559718 CLEC11AQ9Y240 323 aa15.38■□□□□ 0.05
USP3-214ENST00000559718 RRP7AQ9Y3A4 280 aaKnown RBP15.38■□□□□ 0.05
USP3-214ENST00000559718 DICER1Q9UPY3 1922 aaKnown RBP15.38■□□□□ 0.05
USP3-214ENST00000559718 MAPK8IP3Q9UPT6 1336 aa15.38■□□□□ 0.05
USP3-214ENST00000559718 ARFGEF2Q9Y6D5 1785 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 RGL2O15211 777 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 MYL6BP14649 208 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 NPR1P16066 1061 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 IFFO2Q5TF58 517 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 DPY19L2Q6NUT2 758 aa15.37■□□□□ 0.05
USP3-214ENST00000559718 NUTM1Q86Y26 1132 aa15.36■□□□□ 0.05
USP3-214ENST00000559718 MAP3K15Q6ZN16 1313 aa15.36■□□□□ 0.05
USP3-214ENST00000559718 ABCC12Q96J65 1359 aa15.36■□□□□ 0.05
USP3-214ENST00000559718 ERVV-1B6SEH8 477 aa15.35■□□□□ 0.05
USP3-214ENST00000559718 DDNO94850 711 aaPredicted RBP15.35■□□□□ 0.05
USP3-214ENST00000559718 SOGA3Q5TF21 947 aa15.35■□□□□ 0.05
USP3-214ENST00000559718 KLRG1Q96E93 195 aa15.35■□□□□ 0.05
USP3-214ENST00000559718 PNNQ9H307 717 aaKnown RBP15.35■□□□□ 0.05
USP3-214ENST00000559718 ZBTB3Q9H5J0 574 aa15.35■□□□□ 0.05
USP3-214ENST00000559718 NUP98P52948 1817 aa15.34■□□□□ 0.05
USP3-214ENST00000559718 GPTP24298 496 aa15.34■□□□□ 0.05
USP3-214ENST00000559718 GTF2E1P29083 439 aaPredicted RBP15.34■□□□□ 0.05
USP3-214ENST00000559718 RIPK4P57078 832 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms