RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KRBA1A5PL33 1030 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 PALM3A6NDB9 673 aaPredicted RBP10.33□□□□□ -0.76
VPS13C-208ENST00000559119 COL8A1P27658 744 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 PCBP4P57723 403 aaKnown RBP10.33□□□□□ -0.76
VPS13C-208ENST00000559119 ZNF468Q5VIY5 522 aaPredicted RBP10.33□□□□□ -0.76
VPS13C-208ENST00000559119 FCHSD1Q86WN1 690 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 RHPN1Q8TCX5 695 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 STRN4Q9NRL3 753 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 KLF15Q9UIH9 416 aa10.33□□□□□ -0.76
VPS13C-208ENST00000559119 EFSO43281 561 aa10.32□□□□□ -0.76
VPS13C-208ENST00000559119 DGKGP49619 791 aa10.32□□□□□ -0.76
VPS13C-208ENST00000559119 PSMA6P60900 246 aaKnown RBP10.32□□□□□ -0.76
VPS13C-208ENST00000559119 SUV39H2Q9H5I1 410 aa10.32□□□□□ -0.76
VPS13C-208ENST00000559119 PROCP04070 461 aa10.31□□□□□ -0.76
VPS13C-208ENST00000559119 SH3PXD2AQ5TCZ1 1133 aa10.31□□□□□ -0.76
VPS13C-208ENST00000559119 TSPAN10Q9H1Z9 355 aaPredicted RBP10.31□□□□□ -0.76
VPS13C-208ENST00000559119 NOP53Q9NZM5 478 aaKnown RBP10.31□□□□□ -0.76
VPS13C-208ENST00000559119 CLUAP1Q96AJ1 413 aa10.3□□□□□ -0.76
VPS13C-208ENST00000559119 ZNF594Q96JF6 807 aaPredicted RBP10.3□□□□□ -0.76
VPS13C-208ENST00000559119 M0R2N6 131 aa10.29□□□□□ -0.76
VPS13C-208ENST00000559119 TMEM132AQ24JP5 1023 aa10.29□□□□□ -0.76
VPS13C-208ENST00000559119 PROSER2Q86WR7 435 aaPredicted RBP10.29□□□□□ -0.76
VPS13C-208ENST00000559119 HCN4Q9Y3Q4 1203 aa10.29□□□□□ -0.76
VPS13C-208ENST00000559119 ALAS2P22557 587 aa10.28□□□□□ -0.76
VPS13C-208ENST00000559119 C1orf53Q5VUE5 145 aa10.28□□□□□ -0.76
VPS13C-208ENST00000559119 SYT9Q86SS6 491 aa10.28□□□□□ -0.76
VPS13C-208ENST00000559119 SIX5Q8N196 739 aa10.28□□□□□ -0.76
VPS13C-208ENST00000559119 GLMNQ92990 594 aa10.28□□□□□ -0.76
VPS13C-208ENST00000559119 SFI1A8K8P3 1242 aa10.27□□□□□ -0.77
VPS13C-208ENST00000559119 TSEN2Q8NCE0 465 aaKnown RBP10.27□□□□□ -0.77
VPS13C-208ENST00000559119 C7orf43Q8WVR3 580 aa10.27□□□□□ -0.77
VPS13C-208ENST00000559119 PHACTR1Q9C0D0 580 aa10.27□□□□□ -0.77
VPS13C-208ENST00000559119 ANKIB1Q9P2G1 1089 aa10.27□□□□□ -0.77
VPS13C-208ENST00000559119 TFIP11Q9UBB9 837 aaKnown RBP10.27□□□□□ -0.77
VPS13C-208ENST00000559119 ELOA3CA0A087WX78 387 aaPredicted RBP10.26□□□□□ -0.77
VPS13C-208ENST00000559119 ELOA3DA6NLF2 546 aaPredicted RBP10.26□□□□□ -0.77
VPS13C-208ENST00000559119 PPP1R12BO60237 982 aaPredicted RBP10.26□□□□□ -0.77
VPS13C-208ENST00000559119 RASA1P20936 1047 aa10.26□□□□□ -0.77
VPS13C-208ENST00000559119 ELOA3BQ3SY89 546 aa10.26□□□□□ -0.77
VPS13C-208ENST00000559119 ELOA3Q8NG57 546 aa10.26□□□□□ -0.77
VPS13C-208ENST00000559119 ADAM23O75077 832 aa10.25□□□□□ -0.77
VPS13C-208ENST00000559119 HIRAP54198 1017 aaPredicted RBP10.25□□□□□ -0.77
VPS13C-208ENST00000559119 SFSWAPQ12872 951 aaKnown RBP10.25□□□□□ -0.77
VPS13C-208ENST00000559119 NEUROD1Q13562 356 aa10.25□□□□□ -0.77
VPS13C-208ENST00000559119 FNBP4Q8N3X1 1017 aaPredicted RBP10.25□□□□□ -0.77
VPS13C-208ENST00000559119 CEP63Q96MT8 703 aa10.25□□□□□ -0.77
VPS13C-208ENST00000559119 SIN3BO75182 1162 aa10.24□□□□□ -0.77
VPS13C-208ENST00000559119 BAG6P46379 1132 aa10.23□□□□□ -0.77
VPS13C-208ENST00000559119 SEC13P55735 322 aa10.23□□□□□ -0.77
VPS13C-208ENST00000559119 LARP1Q6PKG0 1096 aaKnown RBP10.23□□□□□ -0.77
VPS13C-208ENST00000559119 HSH2DQ96JZ2 352 aa10.23□□□□□ -0.77
VPS13C-208ENST00000559119 BRD7Q9NPI1 651 aa10.23□□□□□ -0.77
VPS13C-208ENST00000559119 MAFBQ9Y5Q3 323 aaPredicted RBP10.23□□□□□ -0.77
VPS13C-208ENST00000559119 C1QTNF9BB2RNN3 333 aa10.22□□□□□ -0.77
VPS13C-208ENST00000559119 SPEM2Q0P670 501 aa10.22□□□□□ -0.77
VPS13C-208ENST00000559119 POTEAQ6S8J7 498 aa10.22□□□□□ -0.77
VPS13C-208ENST00000559119 CHMP7Q8WUX9 453 aaPredicted RBP10.22□□□□□ -0.77
VPS13C-208ENST00000559119 CALR3Q96L12 384 aaKnown RBP10.22□□□□□ -0.77
VPS13C-208ENST00000559119 SLC30A3Q99726 388 aa10.22□□□□□ -0.77
VPS13C-208ENST00000559119 ATAD2Q6PL18 1390 aa10.22□□□□□ -0.77
VPS13C-208ENST00000559119 DKK1O94907 266 aa10.21□□□□□ -0.77
VPS13C-208ENST00000559119 GAS2L2Q8NHY3 880 aa10.21□□□□□ -0.77
VPS13C-208ENST00000559119 SCG3Q8WXD2 468 aaKnown RBP10.21□□□□□ -0.77
VPS13C-208ENST00000559119 SUSD3Q96L08 255 aa10.21□□□□□ -0.77
VPS13C-208ENST00000559119 PLVAPQ9BX97 442 aa10.21□□□□□ -0.77
VPS13C-208ENST00000559119 C21orf2O43822 256 aa10.2□□□□□ -0.78
VPS13C-208ENST00000559119 ALDH16A1Q8IZ83 802 aa10.2□□□□□ -0.78
VPS13C-208ENST00000559119 ZNF280CQ8ND82 737 aa10.2□□□□□ -0.78
VPS13C-208ENST00000559119 TRIM11Q96F44 468 aa10.2□□□□□ -0.78
VPS13C-208ENST00000559119 KCNH4Q9UQ05 1017 aa10.2□□□□□ -0.78
VPS13C-208ENST00000559119 SPDYE3A6NKU9 549 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 ADARB2-AS1A8MUL3 147 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 K7ELQ4 463 aaPredicted RBP10.19□□□□□ -0.78
VPS13C-208ENST00000559119 HIF1AQ16665 826 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 CD163Q86VB7 1156 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 STAG2Q8N3U4 1231 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 TNFRSF25Q93038 417 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 NGLY1Q96IV0 654 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 HINFPQ9BQA5 517 aa10.19□□□□□ -0.78
VPS13C-208ENST00000559119 TYRO3Q06418 890 aa10.18□□□□□ -0.78
VPS13C-208ENST00000559119 RAB44Q7Z6P3 723 aaPredicted RBP10.18□□□□□ -0.78
VPS13C-208ENST00000559119 MDFIQ99750 246 aa10.18□□□□□ -0.78
VPS13C-208ENST00000559119 C2orf49Q9BVC5 232 aaPredicted RBP10.18□□□□□ -0.78
VPS13C-208ENST00000559119 PPP1R12CQ9BZL4 782 aa10.18□□□□□ -0.78
VPS13C-208ENST00000559119 A6NJR5 290 aa10.17□□□□□ -0.78
VPS13C-208ENST00000559119 CHRNA4P43681 627 aa10.17□□□□□ -0.78
VPS13C-208ENST00000559119 KCNQ4P56696 695 aa10.17□□□□□ -0.78
VPS13C-208ENST00000559119 M0R082 166 aa10.16□□□□□ -0.78
VPS13C-208ENST00000559119 FURINP09958 794 aa10.16□□□□□ -0.78
VPS13C-208ENST00000559119 SPATA31C1P0DKV0 1188 aa10.16□□□□□ -0.78
VPS13C-208ENST00000559119 ZNF417Q8TAU3 575 aa10.16□□□□□ -0.78
VPS13C-208ENST00000559119 ZNF587Q96SQ5 575 aaPredicted RBP10.16□□□□□ -0.78
VPS13C-208ENST00000559119 ADH7P40394 386 aa10.15□□□□□ -0.78
VPS13C-208ENST00000559119 DPYDQ12882 1025 aa10.15□□□□□ -0.78
VPS13C-208ENST00000559119 CRTC2Q53ET0 693 aaPredicted RBP10.15□□□□□ -0.78
VPS13C-208ENST00000559119 PRRT3Q5FWE3 981 aa10.15□□□□□ -0.78
VPS13C-208ENST00000559119 BTLAQ7Z6A9 289 aa10.15□□□□□ -0.78
VPS13C-208ENST00000559119 LMOD1P29536 600 aaPredicted RBP10.14□□□□□ -0.79
VPS13C-208ENST00000559119 PTK7Q13308 1070 aa10.14□□□□□ -0.79
VPS13C-208ENST00000559119 BHMTQ93088 406 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms