RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 ZNF277Q9NRM2 450 aaPredicted RBP16.51■□□□□ 0.23
SMAD3-206ENST00000558739 TRPM7Q96QT4 1865 aa16.5■□□□□ 0.23
SMAD3-206ENST00000558739 MRC1P22897 1456 aa16.5■□□□□ 0.23
SMAD3-206ENST00000558739 CANXP27824 592 aaKnown RBP16.5■□□□□ 0.23
SMAD3-206ENST00000558739 C1orf141Q5JVX7 400 aa16.5■□□□□ 0.23
SMAD3-206ENST00000558739 UBR2Q8IWV8 1755 aa16.5■□□□□ 0.23
SMAD3-206ENST00000558739 COL4A5P29400 1685 aa16.5■□□□□ 0.23
SMAD3-206ENST00000558739 TRAF5O00463 557 aa16.49■□□□□ 0.23
SMAD3-206ENST00000558739 PDE6BP35913 854 aa16.49■□□□□ 0.23
SMAD3-206ENST00000558739 BEGAINQ9BUH8 593 aa16.49■□□□□ 0.23
SMAD3-206ENST00000558739 AMOTQ4VCS5 1084 aa16.48■□□□□ 0.23
SMAD3-206ENST00000558739 SRGNP10124 158 aa16.47■□□□□ 0.23
SMAD3-206ENST00000558739 SOX10P56693 466 aa16.47■□□□□ 0.23
SMAD3-206ENST00000558739 DGKZQ13574 1117 aa16.47■□□□□ 0.23
SMAD3-206ENST00000558739 C7orf43Q8WVR3 580 aa16.47■□□□□ 0.23
SMAD3-206ENST00000558739 LGR6Q9HBX8 967 aa16.47■□□□□ 0.23
SMAD3-206ENST00000558739 CST9Q5W186 159 aa16.46■□□□□ 0.23
SMAD3-206ENST00000558739 SLC52A2Q9HAB3 445 aa16.46■□□□□ 0.23
SMAD3-206ENST00000558739 BCORQ6W2J9 1755 aa16.46■□□□□ 0.22
SMAD3-206ENST00000558739 EIF5P55010 431 aaKnown RBP16.45■□□□□ 0.22
SMAD3-206ENST00000558739 STYK1Q6J9G0 422 aa16.45■□□□□ 0.22
SMAD3-206ENST00000558739 PNMA8AQ86V59 439 aaPredicted RBP16.45■□□□□ 0.22
SMAD3-206ENST00000558739 CNKSR1Q969H4 720 aa16.45■□□□□ 0.22
SMAD3-206ENST00000558739 CNBD1Q8NA66 436 aa16.44■□□□□ 0.22
SMAD3-206ENST00000558739 TBC1D2BQ9UPU7 963 aa16.44■□□□□ 0.22
SMAD3-206ENST00000558739 SZT2Q5T011 3432 aa16.44■□□□□ 0.22
SMAD3-206ENST00000558739 ECE1P42892 770 aa16.43■□□□□ 0.22
SMAD3-206ENST00000558739 FKBP4Q02790 459 aaKnown RBP eCLIP16.43■□□□□ 0.22
SMAD3-206ENST00000558739 CCDC93Q567U6 631 aa16.43■□□□□ 0.22
SMAD3-206ENST00000558739 ZNF330Q9Y3S2 320 aaPredicted RBP16.43■□□□□ 0.22
SMAD3-206ENST00000558739 SOGA3Q5TF21 947 aa16.42■□□□□ 0.22
SMAD3-206ENST00000558739 SLC51AQ86UW1 340 aa16.42■□□□□ 0.22
SMAD3-206ENST00000558739 MASTLQ96GX5 879 aa16.42■□□□□ 0.22
SMAD3-206ENST00000558739 PDZRN3Q9UPQ7 1066 aa16.42■□□□□ 0.22
SMAD3-206ENST00000558739 TLL2Q9Y6L7 1015 aa16.42■□□□□ 0.22
SMAD3-206ENST00000558739 FZD9O00144 591 aa16.41■□□□□ 0.22
SMAD3-206ENST00000558739 PRPF38BQ5VTL8 546 aaKnown RBP16.41■□□□□ 0.22
SMAD3-206ENST00000558739 SULT6B1Q6IMI4 303 aa16.41■□□□□ 0.22
SMAD3-206ENST00000558739 ZIC5Q96T25 663 aa16.41■□□□□ 0.22
SMAD3-206ENST00000558739 SNED1Q8TER0 1413 aa16.41■□□□□ 0.22
SMAD3-206ENST00000558739 HTTP42858 3142 aa16.4■□□□□ 0.22
SMAD3-206ENST00000558739 CUL9Q8IWT3 2517 aa16.4■□□□□ 0.22
SMAD3-206ENST00000558739 SLC24A1O60721 1099 aa16.4■□□□□ 0.22
SMAD3-206ENST00000558739 EPS15P42566 896 aa16.4■□□□□ 0.22
SMAD3-206ENST00000558739 GPC2Q8N158 579 aa16.4■□□□□ 0.22
SMAD3-206ENST00000558739 A0A0C4DFX4 3053 aa16.39■□□□□ 0.22
SMAD3-206ENST00000558739 CENPFP49454 3210 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 NPHP1O15259 732 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 SCNN1DP51172 638 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 CIAPIN1Q6FI81 312 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 GJA3Q9Y6H8 435 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 BRCA2P51587 3418 aa16.39■□□□□ 0.21
SMAD3-206ENST00000558739 RNMTO43148 476 aaKnown RBP16.38■□□□□ 0.21
SMAD3-206ENST00000558739 MAP2K2P36507 400 aa16.38■□□□□ 0.21
SMAD3-206ENST00000558739 IARSP41252 1262 aaKnown RBP16.38■□□□□ 0.21
SMAD3-206ENST00000558739 ST5P78524 1137 aa16.38■□□□□ 0.21
SMAD3-206ENST00000558739 SAPCD2Q86UD0 394 aa16.38■□□□□ 0.21
SMAD3-206ENST00000558739 CAMTA2O94983 1202 aa16.37■□□□□ 0.21
SMAD3-206ENST00000558739 AKAP4Q5JQC9 854 aa16.37■□□□□ 0.21
SMAD3-206ENST00000558739 VSIG10Q8N0Z9 540 aa16.37■□□□□ 0.21
SMAD3-206ENST00000558739 SETDB2Q96T68 719 aa16.37■□□□□ 0.21
SMAD3-206ENST00000558739 CEP290O15078 2479 aa16.36■□□□□ 0.21
SMAD3-206ENST00000558739 A0A087WZG4 1122 aa16.36■□□□□ 0.21
SMAD3-206ENST00000558739 CA12O43570 354 aa16.36■□□□□ 0.21
SMAD3-206ENST00000558739 BRPF1P55201 1214 aaPredicted RBP16.36■□□□□ 0.21
SMAD3-206ENST00000558739 SYNE4Q8N205 404 aa16.36■□□□□ 0.21
SMAD3-206ENST00000558739 CELF2O95319 508 aaKnown RBP16.35■□□□□ 0.21
SMAD3-206ENST00000558739 STARD3NLO95772 234 aa16.34■□□□□ 0.21
SMAD3-206ENST00000558739 NPR1P16066 1061 aa16.34■□□□□ 0.21
SMAD3-206ENST00000558739 PIP4K2AP48426 406 aaPredicted RBP16.34■□□□□ 0.21
SMAD3-206ENST00000558739 CDCA8Q53HL2 280 aa16.34■□□□□ 0.21
SMAD3-206ENST00000558739 ZNF496Q96IT1 587 aaPredicted RBP16.34■□□□□ 0.21
SMAD3-206ENST00000558739 A1BGP04217 495 aa16.33■□□□□ 0.2
SMAD3-206ENST00000558739 LMOD1P29536 600 aaPredicted RBP16.33■□□□□ 0.2
SMAD3-206ENST00000558739 GLIS2Q9BZE0 524 aaPredicted RBP16.33■□□□□ 0.2
SMAD3-206ENST00000558739 SIPA1L3O60292 1781 aaPredicted RBP16.32■□□□□ 0.2
SMAD3-206ENST00000558739 IL13P35225 146 aa16.32■□□□□ 0.2
SMAD3-206ENST00000558739 NBPF5PQ86XG9 351 aaPredicted RBP16.32■□□□□ 0.2
SMAD3-206ENST00000558739 RTKN2Q8IZC4 609 aa16.32■□□□□ 0.2
SMAD3-206ENST00000558739 RANBP2P49792 3224 aaKnown RBP16.31■□□□□ 0.2
SMAD3-206ENST00000558739 HEG1Q9ULI3 1381 aa16.31■□□□□ 0.2
SMAD3-206ENST00000558739 KLRG2A4D1S0 409 aaPredicted RBP16.31■□□□□ 0.2
SMAD3-206ENST00000558739 IL6STP40189 918 aaPredicted RBP16.31■□□□□ 0.2
SMAD3-206ENST00000558739 ZNF408Q9H9D4 720 aa16.31■□□□□ 0.2
SMAD3-206ENST00000558739 DLK2Q6UY11 383 aa16.3■□□□□ 0.2
SMAD3-206ENST00000558739 JDP2Q8WYK2 163 aa16.3■□□□□ 0.2
SMAD3-206ENST00000558739 TRIOBPQ9H2D6 2365 aa16.29■□□□□ 0.2
SMAD3-206ENST00000558739 FAM177BA6PVY3 158 aa16.29■□□□□ 0.2
SMAD3-206ENST00000558739 HMOX1P09601 288 aa16.29■□□□□ 0.2
SMAD3-206ENST00000558739 EIF6P56537 245 aaKnown RBP16.29■□□□□ 0.2
SMAD3-206ENST00000558739 MTHFSDQ2M296 383 aaKnown RBP16.29■□□□□ 0.2
SMAD3-206ENST00000558739 USP50Q70EL3 339 aaPredicted RBP16.29■□□□□ 0.2
SMAD3-206ENST00000558739 DZIP3Q86Y13 1208 aaKnown RBP16.29■□□□□ 0.2
SMAD3-206ENST00000558739 TTC5Q8N0Z6 440 aa16.29■□□□□ 0.2
SMAD3-206ENST00000558739 PSMD1Q99460 953 aa16.28■□□□□ 0.2
SMAD3-206ENST00000558739 ABCC12Q96J65 1359 aa16.27■□□□□ 0.2
SMAD3-206ENST00000558739 POLR3GLQ9BT43 218 aa16.27■□□□□ 0.2
SMAD3-206ENST00000558739 HHIPL1Q96JK4 782 aa16.26■□□□□ 0.19
SMAD3-206ENST00000558739 GPRC5DQ9NZD1 345 aa16.26■□□□□ 0.19
SMAD3-206ENST00000558739 PRAMEF22A3QJZ6 481 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms