RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 ZIC5Q96T25 663 aa6.76□□□□□ -1.33
LRRC28-205ENST00000558248 ZCCHC2Q9C0B9 1178 aaKnown RBP6.76□□□□□ -1.33
LRRC28-205ENST00000558248 NOVA2Q9UNW9 492 aaKnown RBP6.76□□□□□ -1.33
LRRC28-205ENST00000558248 DCAF1Q9Y4B6 1507 aa6.76□□□□□ -1.33
LRRC28-205ENST00000558248 ATAD2Q6PL18 1390 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 BNIP3LO60238 219 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 FGFR3P22607 806 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 LORP23490 312 aaPredicted RBP6.75□□□□□ -1.33
LRRC28-205ENST00000558248 CDCA8Q53HL2 280 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 VTI1AQ96AJ9 217 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 ANKIB1Q9P2G1 1089 aa6.75□□□□□ -1.33
LRRC28-205ENST00000558248 CCDC9Q9Y3X0 531 aaKnown RBP6.75□□□□□ -1.33
LRRC28-205ENST00000558248 NCAPD3P42695 1498 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 DCDC2BA2VCK2 349 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 ARID3CA6NKF2 412 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 KHNYNO15037 678 aaKnown RBP6.74□□□□□ -1.33
LRRC28-205ENST00000558248 FAM157BP0CG42 384 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 IGFBP4P22692 258 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 UBAP2LQ14157 1087 aaKnown RBP6.74□□□□□ -1.33
LRRC28-205ENST00000558248 SAMD5Q5TGI4 173 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 ZNF385CQ66K41 422 aaPredicted RBP6.74□□□□□ -1.33
LRRC28-205ENST00000558248 PBXIP1Q96AQ6 731 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 PHACTR1Q9C0D0 580 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 GDF2Q9UK05 429 aaPredicted RBP6.74□□□□□ -1.33
LRRC28-205ENST00000558248 HCN4Q9Y3Q4 1203 aa6.74□□□□□ -1.33
LRRC28-205ENST00000558248 THOC2Q8NI27 1593 aaKnown RBP6.74□□□□□ -1.33
LRRC28-205ENST00000558248 ZCCHC6Q5VYS8 1495 aaKnown RBP6.73□□□□□ -1.33
LRRC28-205ENST00000558248 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.73□□□□□ -1.33
LRRC28-205ENST00000558248 RNF225M0QZC1 329 aaPredicted RBP6.73□□□□□ -1.33
LRRC28-205ENST00000558248 C21orf2O43822 256 aa6.73□□□□□ -1.33
LRRC28-205ENST00000558248 SH3PXD2AQ5TCZ1 1133 aa6.73□□□□□ -1.33
LRRC28-205ENST00000558248 LRRC69Q6ZNQ3 347 aa6.73□□□□□ -1.33
LRRC28-205ENST00000558248 OXCT2Q9BYC2 517 aaPredicted RBP6.73□□□□□ -1.33
LRRC28-205ENST00000558248 NDFIP2Q9NV92 336 aa6.73□□□□□ -1.33
LRRC28-205ENST00000558248 CELA2BP08218 269 aaPredicted RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 MAPTP10636 758 aaKnown RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 BCRP11274 1271 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 LAMC2Q13753 1193 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 ELOAQ14241 798 aaKnown RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 SWI5Q1ZZU3 235 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 POTEAQ6S8J7 498 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 ALDH16A1Q8IZ83 802 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 GOLGA6L1Q8N7Z2 621 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 NGLY1Q96IV0 654 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 C2orf49Q9BVC5 232 aaPredicted RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 LRRC4BQ9NT99 713 aa6.72□□□□□ -1.33
LRRC28-205ENST00000558248 TTBK1Q5TCY1 1321 aaPredicted RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 ACIN1Q9UKV3 1341 aaKnown RBP6.72□□□□□ -1.33
LRRC28-205ENST00000558248 FOXO3O43524 673 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 ATG7O95352 703 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 MARSP56192 900 aaKnown RBP6.71□□□□□ -1.34
LRRC28-205ENST00000558248 TNP2Q05952 138 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 LYPD4Q6UWN0 246 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 NEDD1Q8NHV4 660 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 WHAMMQ8TF30 809 aa6.71□□□□□ -1.34
LRRC28-205ENST00000558248 LGR5O75473 907 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 CD33P20138 364 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 NEUROD1Q13562 356 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 RTN1Q16799 776 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 FAM182BQ5T319 152 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 CCDC82Q8N4S0 544 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 ACDQ96AP0 544 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 KLRG1Q96E93 195 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 MARK1Q9P0L2 795 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 PRR12Q9ULL5 1215 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 ADAMTS8Q9UP79 889 aa6.7□□□□□ -1.34
LRRC28-205ENST00000558248 ZBTB7CA1YPR0 619 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 ARAFP10398 606 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 WEE1P30291 646 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 CTBSQ01459 385 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 PODNQ7Z5L7 613 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 SUSD3Q96L08 255 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 CEP63Q96MT8 703 aa6.69□□□□□ -1.34
LRRC28-205ENST00000558248 EFSO43281 561 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 OIP5O43482 229 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 ARHGEF15O94989 841 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 ADH6P28332 368 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 SLCO4C1Q6ZQN7 724 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 STK32AQ8WU08 396 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 SCARF2Q96GP6 870 aaPredicted RBP6.68□□□□□ -1.34
LRRC28-205ENST00000558248 HSH2DQ96JZ2 352 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 AVENQ9NQS1 362 aaPredicted RBP6.68□□□□□ -1.34
LRRC28-205ENST00000558248 ZMIZ1Q9ULJ6 1067 aa6.68□□□□□ -1.34
LRRC28-205ENST00000558248 SMARCA2P51531 1590 aa6.67□□□□□ -1.34
LRRC28-205ENST00000558248 AMPD1P23109 780 aa6.67□□□□□ -1.34
LRRC28-205ENST00000558248 GALNT6Q8NCL4 622 aa6.67□□□□□ -1.34
LRRC28-205ENST00000558248 BRD7Q9NPI1 651 aa6.67□□□□□ -1.34
LRRC28-205ENST00000558248 GGA1Q9UJY5 639 aa6.67□□□□□ -1.34
LRRC28-205ENST00000558248 C2CD2LO14523 706 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 PRMT3O60678 531 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 PPP1R15AO75807 674 aaPredicted RBP6.66□□□□□ -1.34
LRRC28-205ENST00000558248 EPB42P16452 691 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 SRPK2P78362 688 aaKnown RBP6.66□□□□□ -1.34
LRRC28-205ENST00000558248 ZNF468Q5VIY5 522 aaPredicted RBP6.66□□□□□ -1.34
LRRC28-205ENST00000558248 IER5Q5VY09 327 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 C7orf43Q8WVR3 580 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 EDARADDQ8WWZ3 215 aa6.66□□□□□ -1.34
LRRC28-205ENST00000558248 DNMT3AQ9Y6K1 912 aaPredicted RBP6.66□□□□□ -1.34
LRRC28-205ENST00000558248 ATAD2BQ9ULI0 1458 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms