RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 SRP68Q9UHB9 627 aaKnown RBP13.39□□□□□ -0.27
USP3-207ENST00000558218 C4AP0C0L4 1744 aa13.39□□□□□ -0.27
USP3-207ENST00000558218 COL15A1P39059 1388 aa13.38□□□□□ -0.27
USP3-207ENST00000558218 SNRPA1P09661 255 aaKnown RBP13.38□□□□□ -0.27
USP3-207ENST00000558218 CANXP27824 592 aaKnown RBP13.38□□□□□ -0.27
USP3-207ENST00000558218 MCM10Q7L590 875 aa13.38□□□□□ -0.27
USP3-207ENST00000558218 NPM2Q86SE8 214 aaKnown RBP13.38□□□□□ -0.27
USP3-207ENST00000558218 C10orf71Q711Q0 1435 aa13.38□□□□□ -0.27
USP3-207ENST00000558218 NFE2L2Q16236 605 aa13.37□□□□□ -0.27
USP3-207ENST00000558218 MYBBP1AQ9BQG0 1328 aaKnown RBP13.37□□□□□ -0.27
USP3-207ENST00000558218 POLRMTO00411 1230 aaKnown RBP13.36□□□□□ -0.27
USP3-207ENST00000558218 RGL2O15211 777 aa13.36□□□□□ -0.27
USP3-207ENST00000558218 CHRM1P11229 460 aaPredicted RBP13.36□□□□□ -0.27
USP3-207ENST00000558218 DDR1Q08345 913 aa13.36□□□□□ -0.27
USP3-207ENST00000558218 MAPK8IP3Q9UPT6 1336 aa13.36□□□□□ -0.27
USP3-207ENST00000558218 PXDNLA1KZ92 1463 aa13.36□□□□□ -0.27
USP3-207ENST00000558218 A0A0G2JLW4 131 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 KCNQ3O43525 872 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 DPEP1P16444 411 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 NFIXQ14938 502 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 PIM2Q9P1W9 311 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 METRNQ9UJH8 293 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 TRIM35Q9UPQ4 493 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 USP16Q9Y5T5 823 aa13.35□□□□□ -0.27
USP3-207ENST00000558218 KCNA3P22001 575 aa13.34□□□□□ -0.27
USP3-207ENST00000558218 DCTN1Q14203 1278 aa13.34□□□□□ -0.27
USP3-207ENST00000558218 ZNF467Q7Z7K2 595 aaPredicted RBP13.34□□□□□ -0.27
USP3-207ENST00000558218 BABAM1Q9NWV8 329 aa13.34□□□□□ -0.27
USP3-207ENST00000558218 PDZRN3Q9UPQ7 1066 aa13.34□□□□□ -0.27
USP3-207ENST00000558218 A1BGP04217 495 aa13.33□□□□□ -0.28
USP3-207ENST00000558218 SERPINB2P05120 415 aa13.33□□□□□ -0.28
USP3-207ENST00000558218 LMOD3Q0VAK6 560 aa13.33□□□□□ -0.28
USP3-207ENST00000558218 CLEC4GQ6UXB4 293 aa13.33□□□□□ -0.28
USP3-207ENST00000558218 BCS1LQ9Y276 419 aa13.32□□□□□ -0.28
USP3-207ENST00000558218 KIAA1551Q9HCM1 1747 aa13.31□□□□□ -0.28
USP3-207ENST00000558218 RIPK4P57078 832 aa13.31□□□□□ -0.28
USP3-207ENST00000558218 DALRD3Q5D0E6 543 aaKnown RBP13.31□□□□□ -0.28
USP3-207ENST00000558218 PRKRIP1Q9H875 184 aaPredicted RBP13.31□□□□□ -0.28
USP3-207ENST00000558218 TBC1D2BQ9UPU7 963 aa13.31□□□□□ -0.28
USP3-207ENST00000558218 DLG5Q8TDM6 1919 aa13.31□□□□□ -0.28
USP3-207ENST00000558218 GIGYF1O75420 1035 aaPredicted RBP13.3□□□□□ -0.28
USP3-207ENST00000558218 CAMTA2O94983 1202 aa13.3□□□□□ -0.28
USP3-207ENST00000558218 TMPOP42166 694 aaKnown RBP13.3□□□□□ -0.28
USP3-207ENST00000558218 PSEN1P49768 467 aa13.3□□□□□ -0.28
USP3-207ENST00000558218 DZIP3Q86Y13 1208 aaKnown RBP13.3□□□□□ -0.28
USP3-207ENST00000558218 SETDB2Q96T68 719 aa13.3□□□□□ -0.28
USP3-207ENST00000558218 ZNF652Q9Y2D9 606 aa13.3□□□□□ -0.28
USP3-207ENST00000558218 NRXN2Q9P2S2 1712 aa13.3□□□□□ -0.28
USP3-207ENST00000558218 N4BP2Q86UW6 1770 aaPredicted RBP13.3□□□□□ -0.28
USP3-207ENST00000558218 POTEB2H3BUK9 544 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 EIF4A1P60842 406 aaKnown RBP13.29□□□□□ -0.28
USP3-207ENST00000558218 WDR43Q15061 677 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP3-207ENST00000558218 TBC1D9BQ66K14 1250 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 ARHGAP27Q6ZUM4 889 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 SLC39A7Q92504 469 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 RNF25Q96BH1 459 aaPredicted RBP13.29□□□□□ -0.28
USP3-207ENST00000558218 RUNDC1Q96C34 613 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 BRIP1Q9BX63 1249 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 MIS18AQ9NYP9 233 aa13.29□□□□□ -0.28
USP3-207ENST00000558218 BRCA1P38398 1863 aaKnown RBP13.29□□□□□ -0.28
USP3-207ENST00000558218 PRAMEF22A3QJZ6 481 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 NBPF26B4DH59 902 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 H0YIN7 160 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
USP3-207ENST00000558218 PDE6BP35913 854 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 NBPF10Q6P3W6 841 aaKnown RBP13.28□□□□□ -0.28
USP3-207ENST00000558218 NBPF15Q8N660 670 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 ZNF330Q9Y3S2 320 aaPredicted RBP13.28□□□□□ -0.28
USP3-207ENST00000558218 ADCY9O60503 1353 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 CARMIL3Q8ND23 1372 aa13.28□□□□□ -0.28
USP3-207ENST00000558218 UTRNP46939 3433 aa13.27□□□□□ -0.28
USP3-207ENST00000558218 AFDNP55196 1824 aaKnown RBP13.27□□□□□ -0.28
USP3-207ENST00000558218 ARFGEF1Q9Y6D6 1849 aa13.27□□□□□ -0.28
USP3-207ENST00000558218 CHRNA5P30532 468 aa13.27□□□□□ -0.29
USP3-207ENST00000558218 BICDL1Q6ZP65 573 aa13.27□□□□□ -0.29
USP3-207ENST00000558218 WWC3Q9ULE0 1092 aa13.27□□□□□ -0.29
USP3-207ENST00000558218 ERBB4Q15303 1308 aa13.27□□□□□ -0.29
USP3-207ENST00000558218 ERVV-1B6SEH8 477 aa13.26□□□□□ -0.29
USP3-207ENST00000558218 C1QTNF8P60827 252 aa13.26□□□□□ -0.29
USP3-207ENST00000558218 TTLL6Q8N841 843 aa13.26□□□□□ -0.29
USP3-207ENST00000558218 GPBP1L1Q9HC44 474 aaPredicted RBP13.26□□□□□ -0.29
USP3-207ENST00000558218 ADAMTS8Q9UP79 889 aa13.26□□□□□ -0.29
USP3-207ENST00000558218 KDM3BQ7LBC6 1761 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 ATP10DQ9P241 1426 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 POTEFA5A3E0 1075 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 PRR5LQ6MZQ0 368 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 TPTE2Q6XPS3 522 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 C2CD5Q86YS7 1000 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 THUMPD2Q9BTF0 503 aaKnown RBP13.25□□□□□ -0.29
USP3-207ENST00000558218 TSPYL4Q9UJ04 414 aa13.25□□□□□ -0.29
USP3-207ENST00000558218 SCN7AQ01118 1682 aa13.24□□□□□ -0.29
USP3-207ENST00000558218 CHL1O00533 1208 aa13.24□□□□□ -0.29
USP3-207ENST00000558218 C7P10643 843 aa13.24□□□□□ -0.29
USP3-207ENST00000558218 ST5P78524 1137 aa13.24□□□□□ -0.29
USP3-207ENST00000558218 CNBD1Q8NA66 436 aa13.24□□□□□ -0.29
USP3-207ENST00000558218 COLQQ9Y215 455 aaPredicted RBP13.24□□□□□ -0.29
USP3-207ENST00000558218 NPHP1O15259 732 aa13.23□□□□□ -0.29
USP3-207ENST00000558218 NBPF5PQ86XG9 351 aaPredicted RBP13.23□□□□□ -0.29
USP3-207ENST00000558218 GOLGB1Q14789 3259 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms