RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HSPA1LP34931 641 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 SHANK3Q9BYB0 1731 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 ZNF771Q7L3S4 317 aaPredicted RBP13.13□□□□□ -0.31
USP3-206ENST00000558157 IL17REQ8NFR9 667 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 ADAMTS7Q9UKP4 1686 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 LRP6O75581 1613 aa13.13□□□□□ -0.31
USP3-206ENST00000558157 C1orf141Q5JVX7 400 aa13.12□□□□□ -0.31
USP3-206ENST00000558157 TMEM57Q8N5G2 664 aa13.12□□□□□ -0.31
USP3-206ENST00000558157 CEMIPQ8WUJ3 1361 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 CREBRFQ8IUR6 639 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 SSH1Q8WYL5 1049 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 CGNQ9P2M7 1197 aaKnown RBP13.11□□□□□ -0.31
USP3-206ENST00000558157 SPG7Q9UQ90 795 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 SLIT2O94813 1529 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 SCN11AQ9UI33 1791 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 BRPF1P55201 1214 aaPredicted RBP13.11□□□□□ -0.31
USP3-206ENST00000558157 ALDH1L2Q3SY69 923 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 RNF214Q8ND24 703 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 ZNF428Q96B54 188 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 DNAJC2Q99543 621 aaKnown RBP13.11□□□□□ -0.31
USP3-206ENST00000558157 LGR6Q9HBX8 967 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 ZDHHC9Q9Y397 364 aa13.11□□□□□ -0.31
USP3-206ENST00000558157 CHL1O00533 1208 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 MPRIPQ6WCQ1 1025 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.311e-7■□□□□ 10.9
USP3-206ENST00000558157 SIPA1L3O60292 1781 aaPredicted RBP13.1□□□□□ -0.31
USP3-206ENST00000558157 SPATA31A6Q5VVP1 1343 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 IL2RBP14784 551 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 ANKRD45Q5TZF3 282 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 TSC1Q92574 1164 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 MIS18AQ9NYP9 233 aa13.1□□□□□ -0.31
USP3-206ENST00000558157 NOB1Q9ULX3 412 aaKnown RBP13.1□□□□□ -0.31
USP3-206ENST00000558157 KDM3BQ7LBC6 1761 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 KDM6AO15550 1401 aaPredicted RBP13.09□□□□□ -0.31
USP3-206ENST00000558157 SPDYE4A6NLX3 237 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 RNMTO43148 476 aaKnown RBP13.09□□□□□ -0.31
USP3-206ENST00000558157 PHKG2P15735 406 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 PKP1Q13835 747 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 AK9Q5TCS8 1911 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 DISP2A7MBM2 1401 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 U2AF2P26368 475 aaKnown RBP eCLIP13.09□□□□□ -0.312e-7■■■□□ 16.9
USP3-206ENST00000558157 USP26Q9BXU7 913 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 TSPYL1Q9H0U9 437 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 TSPYL4Q9UJ04 414 aa13.09□□□□□ -0.31
USP3-206ENST00000558157 CYP27B1O15528 508 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 MCM2P49736 904 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 TSPYL6Q8N831 410 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 INTS3Q68E01 1043 aaKnown RBP13.08□□□□□ -0.32
USP3-206ENST00000558157 IFNL2Q8IZJ0 200 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 KIAA1524Q8TCG1 905 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 C8orf37Q96NL8 207 aa13.08□□□□□ -0.32
USP3-206ENST00000558157 RIOK3O14730 519 aaKnown RBP13.07□□□□□ -0.32
USP3-206ENST00000558157 C8orf58Q8NAV2 365 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 ZCRB1Q8TBF4 217 aaKnown RBP13.07□□□□□ -0.32
USP3-206ENST00000558157 JARID2Q92833 1246 aaPredicted RBP13.07□□□□□ -0.32
USP3-206ENST00000558157 PCDH11XQ9BZA7 1347 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 PCDH11YQ9BZA8 1340 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 BRD1O95696 1058 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 TAF7Q15545 349 aaPredicted RBP13.07□□□□□ -0.32
USP3-206ENST00000558157 KRT24Q2M2I5 525 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 TIGD1Q96MW7 591 aa13.07□□□□□ -0.32
USP3-206ENST00000558157 DDX41Q9UJV9 622 aaKnown RBP13.07□□□□□ -0.32
USP3-206ENST00000558157 MRC1P22897 1456 aa13.06□□□□□ -0.32
USP3-206ENST00000558157 ELL2O00472 640 aaPredicted RBP13.06□□□□□ -0.32
USP3-206ENST00000558157 ADCY5O95622 1261 aa13.06□□□□□ -0.32
USP3-206ENST00000558157 CASC1Q6TDU7 716 aa13.06□□□□□ -0.32
USP3-206ENST00000558157 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
USP3-206ENST00000558157 NSFL1CQ9UNZ2 370 aaKnown RBP13.06□□□□□ -0.32
USP3-206ENST00000558157 MORC2Q9Y6X9 1032 aaPredicted RBP13.06□□□□□ -0.32
USP3-206ENST00000558157 SLFN14P0C7P3 912 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 TEFQ10587 303 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 TWISTNBQ3B726 338 aaPredicted RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 CALCOCO1Q9P1Z2 691 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 SPATA31A1Q5TZJ5 1347 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 GOLGA6L6A8MZA4 724 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 VAMP4O75379 141 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 IRX5P78411 483 aaPredicted RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 ZGPATQ8N5A5 531 aaKnown RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 ARHGAP45Q92619 1136 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 NGLY1Q96IV0 654 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 ZNF830Q96NB3 372 aaPredicted RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 TTC12Q9H892 705 aaPredicted RBP13.05□□□□□ -0.32
USP3-206ENST00000558157 USP25Q9UHP3 1055 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 BCL9LQ86UU0 1499 aa13.05□□□□□ -0.32
USP3-206ENST00000558157 INTS4Q96HW7 963 aaKnown RBP13.04□□□□□ -0.32
USP3-206ENST00000558157 TOGARAM1Q9Y4F4 1720 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 REC8O95072 547 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 UNC5CLQ8IV45 518 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 BABAM1Q9NWV8 329 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 SPATA31A5Q5VU36 1347 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 SPATA31A7Q8IWB4 1347 aa13.04□□□□□ -0.32
USP3-206ENST00000558157 ZBTB7BO15156 539 aaPredicted RBP13.03□□□□□ -0.32
USP3-206ENST00000558157 KDM4AO75164 1064 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 CCDC183Q5T5S1 534 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 TNS2Q63HR2 1409 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 NCBP1Q09161 790 aaKnown RBP13.03□□□□□ -0.32
USP3-206ENST00000558157 TERF2Q15554 542 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 MEX3CQ5U5Q3 659 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms