RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SURF6O75683 361 aaKnown RBP19.55■□□□□ 0.72
SHMT2-232ENST00000557487 PPP1R42Q7Z4L9 355 aa19.55■□□□□ 0.72
SHMT2-232ENST00000557487 MYRIPQ8NFW9 859 aa19.55■□□□□ 0.72
SHMT2-232ENST00000557487 TM6SF1Q9BZW5 370 aa19.55■□□□□ 0.72
SHMT2-232ENST00000557487 SH2B1Q9NRF2 756 aaPredicted RBP19.55■□□□□ 0.72
SHMT2-232ENST00000557487 SMC3Q9UQE7 1217 aa19.55■□□□□ 0.72
SHMT2-232ENST00000557487 F13A1P00488 732 aa19.54■□□□□ 0.72
SHMT2-232ENST00000557487 GLRX3O76003 335 aaKnown RBP19.53■□□□□ 0.72
SHMT2-232ENST00000557487 RBM10P98175 930 aaKnown RBP19.53■□□□□ 0.72
SHMT2-232ENST00000557487 HDGFL1Q5TGJ6 251 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 HDAC5Q9UQL6 1122 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 SYT1P21579 422 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 AK2P54819 239 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 KCNB2Q92953 911 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 IL1RAPL2Q9NP60 686 aa19.53■□□□□ 0.72
SHMT2-232ENST00000557487 ANKARQ7Z5J8 1434 aa19.52■□□□□ 0.72
SHMT2-232ENST00000557487 GTF2F1P35269 517 aaKnown RBP eCLIP19.52■□□□□ 0.72
SHMT2-232ENST00000557487 VPS53Q5VIR6 699 aa19.52■□□□□ 0.72
SHMT2-232ENST00000557487 NUTM1Q86Y26 1132 aa19.52■□□□□ 0.72
SHMT2-232ENST00000557487 GDPD2Q9HCC8 539 aa19.52■□□□□ 0.72
SHMT2-232ENST00000557487 SPTLC3Q9NUV7 552 aa19.52■□□□□ 0.72
SHMT2-232ENST00000557487 PIK3C2AO00443 1686 aa19.52■□□□□ 0.71
SHMT2-232ENST00000557487 KDM4AO75164 1064 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 ADCY5O95622 1261 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 NGDNQ8NEJ9 315 aaKnown RBP19.51■□□□□ 0.71
SHMT2-232ENST00000557487 IL17REQ8NFR9 667 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 CNPY2Q9Y2B0 182 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 AHDC1Q5TGY3 1603 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-232ENST00000557487 NOLC1Q14978 699 aaKnown RBP eCLIP19.51■□□□□ 0.711e-8■■■□□ 15.5
SHMT2-232ENST00000557487 RUFY3Q7L099 469 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 IL25Q9H293 177 aa19.51■□□□□ 0.71
SHMT2-232ENST00000557487 SOX12O15370 315 aa19.5■□□□□ 0.71
SHMT2-232ENST00000557487 SRGAP3O43295 1099 aa19.5■□□□□ 0.71
SHMT2-232ENST00000557487 MTX1Q13505 466 aa19.5■□□□□ 0.71
SHMT2-232ENST00000557487 GPATCH3Q96I76 525 aa19.5■□□□□ 0.71
SHMT2-232ENST00000557487 USP25Q9UHP3 1055 aa19.5■□□□□ 0.71
SHMT2-232ENST00000557487 HOXC9P31274 260 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 FUCA2Q9BTY2 467 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 CEMIPQ8WUJ3 1361 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 DNTTIP2Q5QJE6 756 aaKnown RBP19.49■□□□□ 0.71
SHMT2-232ENST00000557487 ERC1Q8IUD2 1116 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 ORAI2Q96SN7 254 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 DIAPH3Q9NSV4 1193 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 HYPKQ9NX55 129 aa19.49■□□□□ 0.71
SHMT2-232ENST00000557487 MED1Q15648 1581 aaPredicted RBP19.48■□□□□ 0.71
SHMT2-232ENST00000557487 GOLGA6L6A8MZA4 724 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 HIP1O00291 1037 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 DNAAF4Q8WXU2 420 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 ZSWIM6Q9HCJ5 1215 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 HCLS1P14317 486 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-232ENST00000557487 BEND3Q5T5X7 828 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 RASEFQ8IZ41 740 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 NECTIN2Q92692 538 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 PDRG1Q9NUG6 133 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 CYP46A1Q9Y6A2 500 aa19.47■□□□□ 0.71
SHMT2-232ENST00000557487 CCDC171Q6TFL3 1326 aa19.46■□□□□ 0.71
SHMT2-232ENST00000557487 NUTM2FA1L443 756 aa19.46■□□□□ 0.71
SHMT2-232ENST00000557487 SMAP1Q8IYB5 467 aaPredicted RBP19.46■□□□□ 0.71
SHMT2-232ENST00000557487 CLASRPQ8N2M8 674 aaKnown RBP19.46■□□□□ 0.71
SHMT2-232ENST00000557487 MTMR6Q9Y217 621 aa19.46■□□□□ 0.71
SHMT2-232ENST00000557487 PHLPP1O60346 1717 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 CASTP20810 708 aaKnown RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 FOXD4L6Q3SYB3 417 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 ESCO1Q5FWF5 840 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 FOXD4L3Q6VB84 417 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 NHSL1Q5SYE7 1610 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 TCHHQ07283 1943 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 COL16A1Q07092 1604 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 CCDC192P0DO97 292 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 ZKSCAN1P17029 563 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 PDCP20941 246 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 NLRP6P59044 892 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 CWC27Q6UX04 472 aaKnown RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 PHAXQ9H814 394 aaKnown RBP19.45■□□□□ 0.7
SHMT2-232ENST00000557487 ECHDC1Q9NTX5 307 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 ELP1O95163 1332 aa19.45■□□□□ 0.7
SHMT2-232ENST00000557487 FIBPO43427 364 aa19.44■□□□□ 0.7
SHMT2-232ENST00000557487 ALDH1L1O75891 902 aa19.44■□□□□ 0.7
SHMT2-232ENST00000557487 GJB2P29033 226 aa19.44■□□□□ 0.7
SHMT2-232ENST00000557487 EVI5LQ96CN4 794 aa19.44■□□□□ 0.7
SHMT2-232ENST00000557487 EIF4A1P60842 406 aaKnown RBP19.43■□□□□ 0.7
SHMT2-232ENST00000557487 CCDC94Q9BW85 323 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-232ENST00000557487 MAP4K4O95819 1239 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-232ENST00000557487 PSMA5P28066 241 aa19.43■□□□□ 0.7
SHMT2-232ENST00000557487 SNRKQ9NRH2 765 aa19.43■□□□□ 0.7
SHMT2-232ENST00000557487 KDM3BQ7LBC6 1761 aa19.43■□□□□ 0.7
SHMT2-232ENST00000557487 SOS2Q07890 1332 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-232ENST00000557487 OS9Q13438 667 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-232ENST00000557487 ANKRD1Q15327 319 aa19.42■□□□□ 0.7
SHMT2-232ENST00000557487 JAKMIP1Q96N16 626 aaKnown RBP19.42■□□□□ 0.7
SHMT2-232ENST00000557487 ALDH8A1Q9H2A2 487 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-232ENST00000557487 MARF1Q9Y4F3 1742 aaKnown RBP19.42■□□□□ 0.7
SHMT2-232ENST00000557487 NBPF7P0C2Y1 421 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-232ENST00000557487 KRT85P78386 507 aa19.41■□□□□ 0.7
SHMT2-232ENST00000557487 JCADQ9P266 1359 aa19.41■□□□□ 0.7
SHMT2-232ENST00000557487 NPHP3Q7Z494 1330 aa19.41■□□□□ 0.7
SHMT2-232ENST00000557487 CHAF1AQ13111 956 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-232ENST00000557487 NECTIN1Q15223 517 aa19.41■□□□□ 0.7
SHMT2-232ENST00000557487 CCDC83Q8IWF9 413 aa19.41■□□□□ 0.7
SHMT2-232ENST00000557487 KIF3AQ9Y496 699 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms