RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 YTHDC2Q9H6S0 1430 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 HMGB1P09429 215 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 TAF3Q5VWG9 929 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 TTC37Q6PGP7 1564 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 MARCH6O60337 910 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 CCT2P78371 535 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 RRP12Q5JTH9 1297 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 TMCO3Q6UWJ1 677 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 CCAR1Q8IX12 1150 aaKnown RBP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 STK11IPQ8N1F8 1099 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 SMARCE1Q969G3 411 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 MYD88Q99836 296 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 DACH1Q9UI36 760 aa17.59■□□□□ 0.41
ARHGEF40-207ENST00000556399 TYRO3Q06418 890 aa17.58■□□□□ 0.41
ARHGEF40-207ENST00000556399 THEMISQ8N1K5 641 aaPredicted RBP17.58■□□□□ 0.41
ARHGEF40-207ENST00000556399 BRMS1Q9HCU9 246 aa17.58■□□□□ 0.41
ARHGEF40-207ENST00000556399 ABCA8O94911 1581 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 PPFIBP1Q86W92 1011 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 AK7Q96M32 723 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 NEK1Q96PY6 1258 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 HMG20BQ9P0W2 317 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 SOS1Q07889 1333 aaPredicted RBP17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 FAM177BA6PVY3 158 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 GSDMDP57764 484 aa17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 SETQ01105 290 aaPredicted RBP17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 ERCC4Q92889 916 aaPredicted RBP17.58■□□□□ 0.4
ARHGEF40-207ENST00000556399 CHPF2Q9P2E5 772 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 CEP126Q9P2H0 1117 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 GADD45BO75293 160 aaPredicted RBP17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 CDKL5O76039 1030 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 IMMTQ16891 758 aaKnown RBP17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 PTGS1P23219 599 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 LEKR1Q6ZMV7 388 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 C8orf76Q96K31 380 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 DNAJC25Q9H1X3 360 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 HYPKQ9NX55 129 aa17.57■□□□□ 0.4
ARHGEF40-207ENST00000556399 PLXNC1O60486 1568 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 CPA1P15085 419 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 CABP4P57796 275 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 CHL1O00533 1208 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 URI1O94763 535 aaPredicted RBP17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 BRD1O95696 1058 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 CAGE1Q8TC20 777 aa17.56■□□□□ 0.4
ARHGEF40-207ENST00000556399 CCDC57Q2TAC2 916 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 TRIM22Q8IYM9 498 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 ZSCAN16Q9H4T2 348 aaPredicted RBP17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 NCKAP5LQ9HCH0 1330 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 TMC6Q7Z403 805 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 GPT2Q8TD30 523 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 PPFIA3O75145 1194 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 VPS37DQ86XT2 251 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 PIBF1Q8WXW3 757 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 RUFY1Q96T51 708 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 AMOTL2Q9Y2J4 779 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 TRPM2O94759 1503 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 ZNF500O60304 480 aaPredicted RBP17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 VPS53Q5VIR6 699 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 CCDC171Q6TFL3 1326 aa17.55■□□□□ 0.4
ARHGEF40-207ENST00000556399 BIN1O00499 593 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 AMOTQ4VCS5 1084 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 KCNH5Q8NCM2 988 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 SNW1Q13573 536 aaKnown RBP17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 C17orf53Q8N3J3 647 aaPredicted RBP17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 CNNM1Q9NRU3 951 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 TTC41PQ6P2S7 1318 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 SKILP12757 684 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 BRF1Q92994 677 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 KIF24Q5T7B8 1368 aa17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 TMX4Q9H1E5 349 aaPredicted RBP17.54■□□□□ 0.4
ARHGEF40-207ENST00000556399 CCDC69A6NI79 296 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 ZSCAN12O43309 604 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 LUZP1Q86V48 1076 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 CHAMP1Q96JM3 812 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 SLC3A2P08195 630 aaKnown RBP17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 MYRIPQ8NFW9 859 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 SYTL4Q96C24 671 aaPredicted RBP17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 PODXL2Q9NZ53 605 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 ERLIN1O75477 346 aa17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 PA2G4Q9UQ80 394 aaKnown RBP17.53■□□□□ 0.4
ARHGEF40-207ENST00000556399 IFIT1P09914 478 aaKnown RBP17.52■□□□□ 0.4
ARHGEF40-207ENST00000556399 TOP1P11387 765 aaKnown RBP17.52■□□□□ 0.4
ARHGEF40-207ENST00000556399 NMIQ13287 307 aaPredicted RBP17.52■□□□□ 0.4
ARHGEF40-207ENST00000556399 NPHP3Q7Z494 1330 aa17.52■□□□□ 0.4
ARHGEF40-207ENST00000556399 LRRIQ1Q96JM4 1722 aa17.52■□□□□ 0.4
ARHGEF40-207ENST00000556399 ZSCAN25Q6NSZ9 544 aa17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 LRRC2Q9BYS8 371 aa17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 SNX14Q9Y5W7 946 aa17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 POLR1AO95602 1720 aaPredicted RBP17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 CREB3L3Q68CJ9 461 aa17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 RUFY3Q7L099 469 aa17.52■□□□□ 0.39
ARHGEF40-207ENST00000556399 PNMA6EA0A0J9YXQ4 647 aa17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 CLSTN1O94985 981 aa17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 NAP1L1P55209 391 aaKnown RBP17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 KIF6Q6ZMV9 814 aa17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 SMAP1Q8IYB5 467 aaPredicted RBP17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 EIF3JO75822 258 aaKnown RBP17.51■□□□□ 0.39
ARHGEF40-207ENST00000556399 ATF3P18847 181 aa17.5■□□□□ 0.39
ARHGEF40-207ENST00000556399 PIP4K2AP48426 406 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms