RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CHST3Q7LGC8 479 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 CREBRFQ8IUR6 639 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 GOLIM4O00461 696 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 RNMTO43148 476 aaKnown RBP17.69■□□□□ 0.42
CUX1-215ENST00000556210 KIF2CQ99661 725 aa17.69■□□□□ 0.42
CUX1-215ENST00000556210 ALKQ9UM73 1620 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 LRRC7Q96NW7 1537 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 PTPRMP28827 1452 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 STX6O43752 255 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 HAND2P61296 217 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 HSP90AB3PQ58FF7 597 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 RBSNQ9H1K0 784 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 HYPKQ9NX55 129 aa17.68■□□□□ 0.42
CUX1-215ENST00000556210 RBM8AQ9Y5S9 174 aaKnown RBP17.68■□□□□ 0.42
CUX1-215ENST00000556210 A0A0U1RQG5 324 aaPredicted RBP17.68■□□□□ 0.42
CUX1-215ENST00000556210 GADD45BO75293 160 aaPredicted RBP17.67■□□□□ 0.42
CUX1-215ENST00000556210 DNM1Q05193 864 aaKnown RBP17.67■□□□□ 0.42
CUX1-215ENST00000556210 TULP1O00294 542 aaPredicted RBP17.67■□□□□ 0.42
CUX1-215ENST00000556210 NMIQ13287 307 aaPredicted RBP17.67■□□□□ 0.42
CUX1-215ENST00000556210 MAP7D2Q96T17 732 aa17.67■□□□□ 0.42
CUX1-215ENST00000556210 MROH2AA6NES4 1674 aa17.67■□□□□ 0.42
CUX1-215ENST00000556210 LMBR1LQ6UX01 489 aa17.67■□□□□ 0.42
CUX1-215ENST00000556210 CCDC129Q6ZRS4 1044 aa17.67■□□□□ 0.42
CUX1-215ENST00000556210 GOLGA6L19H0YKK7 550 aa17.66■□□□□ 0.42
CUX1-215ENST00000556210 ERBB4Q15303 1308 aa17.66■□□□□ 0.42
CUX1-215ENST00000556210 AATKQ6ZMQ8 1374 aa17.66■□□□□ 0.42
CUX1-215ENST00000556210 SUCLG2Q96I99 432 aa17.65■□□□□ 0.42
CUX1-215ENST00000556210 USP6P35125 1406 aa17.65■□□□□ 0.42
CUX1-215ENST00000556210 ARHGAP31Q2M1Z3 1444 aa17.65■□□□□ 0.42
CUX1-215ENST00000556210 RRP12Q5JTH9 1297 aaKnown RBP17.65■□□□□ 0.42
CUX1-215ENST00000556210 TRIM5Q9C035 493 aa17.65■□□□□ 0.42
CUX1-215ENST00000556210 TIMM10P62072 90 aa17.64■□□□□ 0.42
CUX1-215ENST00000556210 SASS6Q6UVJ0 657 aa17.64■□□□□ 0.42
CUX1-215ENST00000556210 RASEFQ8IZ41 740 aa17.64■□□□□ 0.42
CUX1-215ENST00000556210 USP16Q9Y5T5 823 aa17.64■□□□□ 0.42
CUX1-215ENST00000556210 NEXMIFQ5QGS0 1516 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 BRPF1P55201 1214 aaPredicted RBP17.64■□□□□ 0.41
CUX1-215ENST00000556210 CCDC57Q2TAC2 916 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 ZNF496Q96IT1 587 aaPredicted RBP17.64■□□□□ 0.41
CUX1-215ENST00000556210 LMBRD1Q9NUN5 540 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 ARHGEF40Q8TER5 1519 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 HTATSF1O43719 755 aaKnown RBP17.64■□□□□ 0.41
CUX1-215ENST00000556210 KRT85P78386 507 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 RALYLQ86SE5 291 aaKnown RBP17.64■□□□□ 0.41
CUX1-215ENST00000556210 SPATA32Q96LK8 384 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 SDF4Q9BRK5 362 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 TMEM63CQ9P1W3 806 aa17.64■□□□□ 0.41
CUX1-215ENST00000556210 NFXL1Q6ZNB6 911 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 CNNM1Q9NRU3 951 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 EVI5LQ96CN4 794 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 CEP126Q9P2H0 1117 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 NSFL1CQ9UNZ2 370 aaKnown RBP17.63■□□□□ 0.41
CUX1-215ENST00000556210 IQSEC2Q5JU85 1478 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 PTH1RQ03431 593 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 IFNL2Q8IZJ0 200 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 CCDC82Q8N4S0 544 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 MTMR7Q9Y216 660 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 CAMSAP1Q5T5Y3 1602 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 ATP7BP35670 1465 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 SYT1P21579 422 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 LINS1Q8NG48 757 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 SNX14Q9Y5W7 946 aa17.63■□□□□ 0.41
CUX1-215ENST00000556210 IGSF1Q8N6C5 1336 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 CPS1P31327 1500 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 OFD1O75665 1012 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 KIAA0232Q92628 1395 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 IDH1O75874 414 aaKnown RBP17.62■□□□□ 0.41
CUX1-215ENST00000556210 TFCP2Q12800 502 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 TTC39AQ5SRH9 613 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 BRF1Q92994 677 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 TNMDQ9H2S6 317 aa17.62■□□□□ 0.41
CUX1-215ENST00000556210 ZNF790Q6PG37 636 aa17.61■□□□□ 0.41
CUX1-215ENST00000556210 ZNF594Q96JF6 807 aaPredicted RBP17.61■□□□□ 0.41
CUX1-215ENST00000556210 ME1P48163 572 aa17.61■□□□□ 0.41
CUX1-215ENST00000556210 TLR7Q9NYK1 1049 aaKnown RBP17.61■□□□□ 0.41
CUX1-215ENST00000556210 NRXN1Q9ULB1 1477 aa17.61■□□□□ 0.41
CUX1-215ENST00000556210 TRDNQ13061 729 aa17.61■□□□□ 0.41
CUX1-215ENST00000556210 HIP1O00291 1037 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 SGSM2O43147 1006 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 EAF2Q96CJ1 260 aaPredicted RBP17.6■□□□□ 0.41
CUX1-215ENST00000556210 IFIT1P09914 478 aaKnown RBP17.6■□□□□ 0.41
CUX1-215ENST00000556210 BEND3Q5T5X7 828 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 GIGYF1O75420 1035 aaPredicted RBP17.6■□□□□ 0.41
CUX1-215ENST00000556210 A1BGP04217 495 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 SNRPA1P09661 255 aaKnown RBP17.6■□□□□ 0.41
CUX1-215ENST00000556210 ZSCAN22P10073 491 aaPredicted RBP17.6■□□□□ 0.41
CUX1-215ENST00000556210 PDCP20941 246 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 ADCK5Q3MIX3 580 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 PRDM10Q9NQV6 1147 aa17.6■□□□□ 0.41
CUX1-215ENST00000556210 GPT2Q8TD30 523 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 TTC12Q9H892 705 aaPredicted RBP17.59■□□□□ 0.41
CUX1-215ENST00000556210 SETBP1Q9Y6X0 1596 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 LMTK2Q8IWU2 1503 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 SSH3Q8TE77 659 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 SEC62Q99442 399 aaKnown RBP17.59■□□□□ 0.41
CUX1-215ENST00000556210 KIF3AQ9Y496 699 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 GOLGA6L6A8MZA4 724 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 CCDC73Q6ZRK6 1079 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 DBNDD2Q9BQY9 259 aa17.59■□□□□ 0.41
CUX1-215ENST00000556210 AXIN2Q9Y2T1 843 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms