RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 LMBRD1Q9NUN5 540 aa8.5□□□□□ -1.05
TDP1-213ENST00000555880 NPHP4O75161 1426 aaPredicted RBP8.49□□□□□ -1.05
TDP1-213ENST00000555880 PRPF40AO75400 957 aaKnown RBP8.49□□□□□ -1.05
TDP1-213ENST00000555880 MBD3O95983 291 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 HOXB7P09629 217 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 ZSCAN23Q3MJ62 389 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 HSP90AB4PQ58FF6 505 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 SSH3Q8TE77 659 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 INTS4Q96HW7 963 aaKnown RBP8.49□□□□□ -1.05
TDP1-213ENST00000555880 USP44Q9H0E7 712 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 BOLA1Q9Y3E2 137 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 SURF6O75683 361 aaKnown RBP8.49□□□□□ -1.05
TDP1-213ENST00000555880 PKP1Q13835 747 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 PPP1R9BQ96SB3 815 aa8.49□□□□□ -1.05
TDP1-213ENST00000555880 KDM3BQ7LBC6 1761 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 TEFQ10587 303 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 PPP1R42Q7Z4L9 355 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 USHBP1Q8N6Y0 703 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 IP6K1Q92551 441 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 KIF1BPQ96EK5 621 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 PHF8Q9UPP1 1060 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 ADGRL3Q9HAR2 1447 aa8.48□□□□□ -1.05
TDP1-213ENST00000555880 CEMIPQ8WUJ3 1361 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 LMO7Q8WWI1 1683 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 SRGAP3O43295 1099 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 PRKCSHP14314 528 aaPredicted RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 EIF2S2P20042 333 aaKnown RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 CUL4AQ13619 759 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 CNTROBQ8N137 903 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 KCNH5Q8NCM2 988 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 SYAP1Q96A49 352 aaPredicted RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 IL1RAPL2Q9NP60 686 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 HDAC5Q9UQL6 1122 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 SETD1BQ9UPS6 1966 aaKnown RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 MED1Q15648 1581 aaPredicted RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 OS9Q13438 667 aaPredicted RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 KIAA1211Q6ZU35 1233 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 NUTM1Q86Y26 1132 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 RHPN1Q8TCX5 695 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 DNAAF4Q8WXU2 420 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 IL17RAQ96F46 866 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 PHAXQ9H814 394 aaKnown RBP8.47□□□□□ -1.05
TDP1-213ENST00000555880 PALD1Q9ULE6 856 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 ZDHHC9Q9Y397 364 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 NFAT5O94916 1531 aa8.47□□□□□ -1.05
TDP1-213ENST00000555880 ZNF142P52746 1687 aaPredicted RBP8.46□□□□□ -1.05
TDP1-213ENST00000555880 CHD2O14647 1828 aaKnown RBP8.46□□□□□ -1.05
TDP1-213ENST00000555880 WDR33Q9C0J8 1336 aaKnown RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 G3V3G9 751 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 BRD1O95696 1058 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 MSNP26038 577 aaKnown RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 EIF4A1P60842 406 aaKnown RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 PSME1Q06323 249 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 PLEKHO1Q53GL0 409 aaPredicted RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 FOXD4L5Q5VV16 416 aaPredicted RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 NOL8Q76FK4 1167 aaKnown RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 PROSER2Q86WR7 435 aaPredicted RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 FOXD4L4Q8WXT5 416 aaPredicted RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 GPATCH3Q96I76 525 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 CHPF2Q9P2E5 772 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 PCDH10Q9P2E7 1040 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 NCAPD2Q15021 1401 aa8.46□□□□□ -1.06
TDP1-213ENST00000555880 PHRF1Q9P1Y6 1649 aaKnown RBP8.46□□□□□ -1.06
TDP1-213ENST00000555880 ERBB4Q15303 1308 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 ZBTB7CA1YPR0 619 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 BTBD11A6QL63 1104 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 SNPHO15079 494 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 PHF14O94880 888 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 HSPA4P34932 840 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 AMOTQ4VCS5 1084 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 HS1BP3Q53T59 392 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 ESCO1Q5FWF5 840 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 AKAP4Q5JQC9 854 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 C1orf141Q5JVX7 400 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 ZNF530Q6P9A1 599 aaPredicted RBP8.45□□□□□ -1.06
TDP1-213ENST00000555880 ZSCAN30Q86W11 494 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 UNC5CLQ8IV45 518 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 GPT2Q8TD30 523 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 UPF3BQ9BZI7 483 aaKnown RBP8.45□□□□□ -1.06
TDP1-213ENST00000555880 TTC41PQ6P2S7 1318 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 RAD50Q92878 1312 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 PI4KAP2A4QPH2 592 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 ECM2O94769 699 aaPredicted RBP8.45□□□□□ -1.06
TDP1-213ENST00000555880 BEND3Q5T5X7 828 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 LRSAM1Q6UWE0 723 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 PI4KAP1Q8N8J0 262 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 RUFY2Q8WXA3 655 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 MARVELD3Q96A59 401 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 RBM33Q96EV2 1170 aaKnown RBP8.45□□□□□ -1.06
TDP1-213ENST00000555880 MS4A4AQ96JQ5 239 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 DIAPH3Q9NSV4 1193 aa8.45□□□□□ -1.06
TDP1-213ENST00000555880 DBF4Q9UBU7 674 aaPredicted RBP8.45□□□□□ -1.06
TDP1-213ENST00000555880 OVOS2A0A0G2JMS6 1433 aa8.44□□□□□ -1.06
TDP1-213ENST00000555880 RGPD2P0DJD1 1756 aa8.44□□□□□ -1.06
TDP1-213ENST00000555880 SGSM2O43147 1006 aa8.44□□□□□ -1.06
TDP1-213ENST00000555880 GLRX3O76003 335 aaKnown RBP8.44□□□□□ -1.06
TDP1-213ENST00000555880 NBPF7P0C2Y1 421 aaPredicted RBP8.44□□□□□ -1.06
TDP1-213ENST00000555880 NBPF6Q5VWK0 638 aa8.44□□□□□ -1.06
TDP1-213ENST00000555880 ERC1Q8IUD2 1116 aa8.44□□□□□ -1.06
TDP1-213ENST00000555880 CDAN1Q8IWY9 1227 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms