RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 COPS6Q7L5N1 327 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 PLBD2Q8NHP8 589 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 DNAAF4Q8WXU2 420 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 PHAXQ9H814 394 aaKnown RBP14.15□□□□□ -0.14
SHMT2-220ENST00000555634 HDAC5Q9UQL6 1122 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 PI4KAP2A4QPH2 592 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 PIP4K2AP48426 406 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-220ENST00000555634 MVPQ14764 893 aaKnown RBP14.14□□□□□ -0.15
SHMT2-220ENST00000555634 PDIA6Q15084 440 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 ERICH6BQ5W0A0 696 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 ANKRD13DQ6ZTN6 518 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 G2E3Q7L622 706 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 DZIP3Q86Y13 1208 aaKnown RBP14.14□□□□□ -0.15
SHMT2-220ENST00000555634 PI4KAP1Q8N8J0 262 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 FLAD1Q8NFF5 587 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 MAP3K2Q9Y2U5 619 aa14.14□□□□□ -0.15
SHMT2-220ENST00000555634 NBPF26B4DH59 902 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 ZPR1O75312 459 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 RPS6KA4O75676 772 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 NBPF14Q5TI25 921 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 NBPF10Q6P3W6 841 aaKnown RBP14.13□□□□□ -0.15
SHMT2-220ENST00000555634 INTS5Q6P9B9 1019 aaKnown RBP14.13□□□□□ -0.15
SHMT2-220ENST00000555634 NBPF15Q8N660 670 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 SRCIN1Q9C0H9 1055 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 STK32BQ9NY57 414 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 MAP3K15Q6ZN16 1313 aa14.13□□□□□ -0.15
SHMT2-220ENST00000555634 COL24A1Q17RW2 1714 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 ADCY9O60503 1353 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 RGL2O15211 777 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 SSFA2P28290 1259 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 RFC4P35249 363 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 KCNQ4P56696 695 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 IRX6P78412 446 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-220ENST00000555634 FKBP8Q14318 412 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 PANK1Q8TE04 598 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 ZBTB3Q9H5J0 574 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 TFCP2L1Q9NZI6 479 aa14.12□□□□□ -0.15
SHMT2-220ENST00000555634 ERVV-1B6SEH8 477 aa14.11□□□□□ -0.15
SHMT2-220ENST00000555634 PHF14O94880 888 aa14.11□□□□□ -0.15
SHMT2-220ENST00000555634 EIF5P55010 431 aaKnown RBP14.11□□□□□ -0.15
SHMT2-220ENST00000555634 EN1Q05925 392 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-220ENST00000555634 TRAPPC3LQ5T215 181 aa14.11□□□□□ -0.15
SHMT2-220ENST00000555634 COG6Q9Y2V7 657 aa14.11□□□□□ -0.15
SHMT2-220ENST00000555634 CASZ1Q86V15 1759 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 F6X3S4 739 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 ALDH1L1O75891 902 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 INTS3Q68E01 1043 aaKnown RBP14.1□□□□□ -0.15
SHMT2-220ENST00000555634 TMEM57Q8N5G2 664 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 LINS1Q8NG48 757 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 METTL22Q9BUU2 404 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-220ENST00000555634 LRRC4BQ9NT99 713 aa14.1□□□□□ -0.15
SHMT2-220ENST00000555634 IBTKQ9P2D0 1353 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-220ENST00000555634 MSH5O43196 834 aa14.09□□□□□ -0.15
SHMT2-220ENST00000555634 GNAI3P08754 354 aa14.09□□□□□ -0.15
SHMT2-220ENST00000555634 EZH2Q15910 746 aaKnown RBP14.09□□□□□ -0.15
SHMT2-220ENST00000555634 CRBNQ96SW2 442 aa14.09□□□□□ -0.15
SHMT2-220ENST00000555634 MYD88Q99836 296 aa14.09□□□□□ -0.15
SHMT2-220ENST00000555634 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.08□□□□□ -0.16
SHMT2-220ENST00000555634 HSP90B1P14625 803 aaKnown RBP14.08□□□□□ -0.16
SHMT2-220ENST00000555634 GIGYF2Q6Y7W6 1299 aaKnown RBP14.08□□□□□ -0.16
SHMT2-220ENST00000555634 TTLL7Q6ZT98 887 aa14.08□□□□□ -0.16
SHMT2-220ENST00000555634 LRP10Q7Z4F1 713 aa14.08□□□□□ -0.16
SHMT2-220ENST00000555634 CAMKK2Q96RR4 588 aa14.08□□□□□ -0.16
SHMT2-220ENST00000555634 C9orf78Q9NZ63 289 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-220ENST00000555634 TBC1D2BQ9UPU7 963 aa14.08□□□□□ -0.16
SHMT2-220ENST00000555634 NPHP1O15259 732 aa14.07□□□□□ -0.16
SHMT2-220ENST00000555634 UBTFL1P0CB47 393 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-220ENST00000555634 RLBP1P12271 317 aa14.07□□□□□ -0.16
SHMT2-220ENST00000555634 C20orf194Q5TEA3 1177 aa14.07□□□□□ -0.16
SHMT2-220ENST00000555634 CLEC4GQ6UXB4 293 aa14.07□□□□□ -0.16
SHMT2-220ENST00000555634 CWC25Q9NXE8 425 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-220ENST00000555634 NARFQ9UHQ1 456 aa14.07□□□□□ -0.16
SHMT2-220ENST00000555634 USP42Q9H9J4 1324 aaKnown RBP14.07□□□□□ -0.16
SHMT2-220ENST00000555634 PARP10Q53GL7 1025 aa14.06□□□□□ -0.16
SHMT2-220ENST00000555634 CCDC191Q8NCU4 936 aa14.06□□□□□ -0.16
SHMT2-220ENST00000555634 UPF1Q92900 1129 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT2-220ENST00000555634 TCIRG1Q13488 830 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 BEND3Q5T5X7 828 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 PPP1R42Q7Z4L9 355 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 DEFB132Q7Z7B7 95 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 TNNQ9UQP3 1299 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 CARMIL3Q8ND23 1372 aa14.05□□□□□ -0.16
SHMT2-220ENST00000555634 DDX60Q8IY21 1712 aaKnown RBP14.04□□□□□ -0.16
SHMT2-220ENST00000555634 NEURL1BA8MQ27 555 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 GRM8O00222 908 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 CAMTA2O94983 1202 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 ZNF827Q17R98 1081 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 CWF19L2Q2TBE0 894 aaKnown RBP14.04□□□□□ -0.16
SHMT2-220ENST00000555634 USPL1Q5W0Q7 1092 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 PROM2Q8N271 834 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 EXOC6Q8TAG9 804 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 NYXQ9GZU5 481 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 NIP7Q9Y221 180 aaKnown RBP eCLIP14.04□□□□□ -0.16
SHMT2-220ENST00000555634 GTF3C3Q9Y5Q9 886 aa14.04□□□□□ -0.16
SHMT2-220ENST00000555634 ATP5J2-PTCD1G3V325 749 aa14.03□□□□□ -0.16
SHMT2-220ENST00000555634 GNAI2P04899 355 aa14.03□□□□□ -0.16
SHMT2-220ENST00000555634 SLC15A2Q16348 729 aa14.03□□□□□ -0.16
SHMT2-220ENST00000555634 ARHGEF1Q92888 912 aaKnown RBP14.03□□□□□ -0.16
SHMT2-220ENST00000555634 SETDB2Q96T68 719 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms