RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 M0R082 166 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 SOX11P35716 441 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 TEAD4Q15561 434 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 SH3PXD2AQ5TCZ1 1133 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 ZNF417Q8TAU3 575 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 ZNF587Q96SQ5 575 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-216ENST00000555550 MDFIQ99750 246 aa8.91□□□□□ -0.98
SCFD1-216ENST00000555550 EML1O00423 815 aa8.9□□□□□ -0.98
SCFD1-216ENST00000555550 COL9A3Q14050 684 aaPredicted RBP8.9□□□□□ -0.98
SCFD1-216ENST00000555550 PRRT3Q5FWE3 981 aa8.9□□□□□ -0.98
SCFD1-216ENST00000555550 DEPDC4Q8N2C3 294 aa8.9□□□□□ -0.98
SCFD1-216ENST00000555550 TPSG1Q9NRR2 321 aa8.9□□□□□ -0.98
SCFD1-216ENST00000555550 STARD13Q9Y3M8 1113 aa8.9□□□□□ -0.98
SCFD1-216ENST00000555550 SIN3BO75182 1162 aa8.89□□□□□ -0.99
SCFD1-216ENST00000555550 NCOA4Q13772 614 aa8.89□□□□□ -0.99
SCFD1-216ENST00000555550 NKAPLQ5M9Q1 402 aa8.89□□□□□ -0.99
SCFD1-216ENST00000555550 RAB44Q7Z6P3 723 aaPredicted RBP8.89□□□□□ -0.99
SCFD1-216ENST00000555550 SLC9A9Q8IVB4 645 aa8.89□□□□□ -0.99
SCFD1-216ENST00000555550 SPDYE3A6NKU9 549 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 APBA3O96018 575 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 EPHA4P54764 986 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 GRIK4Q16099 956 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 FOXD4L6Q3SYB3 417 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-216ENST00000555550 FOXD4L3Q6VB84 417 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-216ENST00000555550 MICALL1Q8N3F8 863 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 ALG2Q9H553 416 aa8.88□□□□□ -0.99
SCFD1-216ENST00000555550 ADARB2-AS1A8MUL3 147 aa8.87□□□□□ -0.99
SCFD1-216ENST00000555550 ALBP02768 609 aa8.87□□□□□ -0.99
SCFD1-216ENST00000555550 TRIM28Q13263 835 aaKnown RBP8.87□□□□□ -0.99
SCFD1-216ENST00000555550 SERTM1A2A2V5 107 aa8.86□□□□□ -0.99
SCFD1-216ENST00000555550 MCM6Q14566 821 aa8.86□□□□□ -0.99
SCFD1-216ENST00000555550 COG6Q9Y2V7 657 aa8.86□□□□□ -0.99
SCFD1-216ENST00000555550 HCN4Q9Y3Q4 1203 aa8.86□□□□□ -0.99
SCFD1-216ENST00000555550 SCO2A0A1W2PP80 73 aa8.85□□□□□ -0.99
SCFD1-216ENST00000555550 SPEM2Q0P670 501 aa8.85□□□□□ -0.99
SCFD1-216ENST00000555550 RHPN1Q8TCX5 695 aa8.85□□□□□ -0.99
SCFD1-216ENST00000555550 TNFRSF25Q93038 417 aa8.85□□□□□ -0.99
SCFD1-216ENST00000555550 CEP63Q96MT8 703 aa8.85□□□□□ -0.99
SCFD1-216ENST00000555550 SFI1A8K8P3 1242 aa8.84□□□□□ -0.99
SCFD1-216ENST00000555550 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-216ENST00000555550 ZBTB7BO15156 539 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-216ENST00000555550 LZTS3O60299 673 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-216ENST00000555550 ADH7P40394 386 aa8.84□□□□□ -0.99
SCFD1-216ENST00000555550 HSH2DQ96JZ2 352 aa8.84□□□□□ -0.99
SCFD1-216ENST00000555550 KRTAP9-2Q9BYQ4 174 aa8.84□□□□□ -0.99
SCFD1-216ENST00000555550 DYRK3O43781 588 aa8.83□□□□□ -1
SCFD1-216ENST00000555550 PRKCSHP14314 528 aaPredicted RBP8.83□□□□□ -1
SCFD1-216ENST00000555550 NID1P14543 1247 aa8.83□□□□□ -1
SCFD1-216ENST00000555550 ZNF280CQ8ND82 737 aa8.83□□□□□ -1
SCFD1-216ENST00000555550 KIAA1024Q9UPX6 916 aa8.83□□□□□ -1
SCFD1-216ENST00000555550 USP17L5A8MUK1 530 aa8.82□□□□□ -1
SCFD1-216ENST00000555550 TRAPPC3LQ5T215 181 aa8.82□□□□□ -1
SCFD1-216ENST00000555550 TPCN2Q8NHX9 752 aa8.82□□□□□ -1
SCFD1-216ENST00000555550 TSPAN10Q9H1Z9 355 aaPredicted RBP8.82□□□□□ -1
SCFD1-216ENST00000555550 BRD7Q9NPI1 651 aa8.82□□□□□ -1
SCFD1-216ENST00000555550 PRDM6Q9NQX0 595 aa8.82□□□□□ -1
SCFD1-216ENST00000555550 PRSS36Q5K4E3 855 aa8.81□□□□□ -1
SCFD1-216ENST00000555550 C20orf204Q6ZNR8 217 aa8.81□□□□□ -1
SCFD1-216ENST00000555550 NFATC2IPQ8NCF5 419 aa8.81□□□□□ -1
SCFD1-216ENST00000555550 IGFLR1Q9H665 355 aa8.81□□□□□ -1
SCFD1-216ENST00000555550 KRTAP9-6A0A140TA67 174 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 TBC1D8BQ0IIM8 1120 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 NEUROD1Q13562 356 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 CCDC102BQ68D86 513 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 BHMTQ93088 406 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 POM121Q96HA1 1249 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 PHACTR1Q9C0D0 580 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 KCNH4Q9UQ05 1017 aa8.8□□□□□ -1
SCFD1-216ENST00000555550 GPC6Q9Y625 555 aaPredicted RBP8.8□□□□□ -1
SCFD1-216ENST00000555550 CLDN10P78369 228 aa8.79□□□□□ -1
SCFD1-216ENST00000555550 NACC1Q96RE7 527 aa8.79□□□□□ -1
SCFD1-216ENST00000555550 PSMA6P60900 246 aaKnown RBP8.78□□□□□ -1
SCFD1-216ENST00000555550 C1orf53Q5VUE5 145 aa8.78□□□□□ -1
SCFD1-216ENST00000555550 SUSD3Q96L08 255 aa8.78□□□□□ -1
SCFD1-216ENST00000555550 ANKIB1Q9P2G1 1089 aa8.78□□□□□ -1
SCFD1-216ENST00000555550 LILRB5O75023 590 aa8.77□□□□□ -1.01
SCFD1-216ENST00000555550 SELPP16109 830 aa8.77□□□□□ -1.01
SCFD1-216ENST00000555550 TYRO3Q06418 890 aa8.77□□□□□ -1.01
SCFD1-216ENST00000555550 TRIM50Q86XT4 487 aa8.77□□□□□ -1.01
SCFD1-216ENST00000555550 NUDT8Q8WV74 236 aa8.77□□□□□ -1.01
SCFD1-216ENST00000555550 POM121CA8CG34 1229 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 KCNQ4P56696 695 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 ARTNQ5T4W7 220 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 SHISA2Q6UWI4 295 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 ZFP64Q9NPA5 681 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 CHMP3Q9Y3E7 222 aa8.76□□□□□ -1.01
SCFD1-216ENST00000555550 A0A0A0MRY4 1105 aa8.75□□□□□ -1.01
SCFD1-216ENST00000555550 C9orf172C9J069 976 aa8.75□□□□□ -1.01
SCFD1-216ENST00000555550 TSEN2Q8NCE0 465 aaKnown RBP8.75□□□□□ -1.01
SCFD1-216ENST00000555550 ADAMTS19Q8TE59 1207 aa8.75□□□□□ -1.01
SCFD1-216ENST00000555550 UBE2OQ9C0C9 1292 aaKnown RBP8.75□□□□□ -1.01
SCFD1-216ENST00000555550 USP17L3A6NCW0 530 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 USP17L4A6NCW7 530 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 PPP1R12BO60237 982 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-216ENST00000555550 ATP1A2P50993 1020 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 ADGRE1Q14246 886 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 MBTPS1Q14703 1052 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 USP17L2Q6R6M4 530 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 USP17L1Q7RTZ2 530 aa8.74□□□□□ -1.01
SCFD1-216ENST00000555550 OGFOD1Q8N543 542 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms