RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 HMMRO75330 724 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 NOP58Q9Y2X3 529 aaKnown RBP11.09□□□□□ -0.63
TDP1-210ENST00000554976 SCN7AQ01118 1682 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 ADAMTS2O95450 1211 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 MYL6BP14649 208 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 TTC22Q5TAA0 569 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 TMOD3Q9NYL9 352 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 ASAP1Q9ULH1 1129 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 UBAP1LF5GYI3 381 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 SMARCA5O60264 1052 aaPredicted RBP11.09□□□□□ -0.63
TDP1-210ENST00000554976 PIP4K2AP48426 406 aaPredicted RBP11.09□□□□□ -0.63
TDP1-210ENST00000554976 PPP1R42Q7Z4L9 355 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 PLBD2Q8NHP8 589 aa11.09□□□□□ -0.63
TDP1-210ENST00000554976 SPATA31A6Q5VVP1 1343 aa11.08□□□□□ -0.63
TDP1-210ENST00000554976 DDX58O95786 925 aaKnown RBP11.08□□□□□ -0.64
TDP1-210ENST00000554976 VPS72Q15906 364 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 MARCH10Q8NA82 808 aaPredicted RBP11.08□□□□□ -0.64
TDP1-210ENST00000554976 SUCLG2Q96I99 432 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 TBC1D32Q96NH3 1257 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 LRP5O75197 1615 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 GRM8O00222 908 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 EIF5BO60841 1220 aaKnown RBP11.08□□□□□ -0.64
TDP1-210ENST00000554976 GCKRQ14397 625 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 UNC5CLQ8IV45 518 aa11.08□□□□□ -0.64
TDP1-210ENST00000554976 ANKRD13DQ6ZTN6 518 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 CERKQ8TCT0 537 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 USP42Q9H9J4 1324 aaKnown RBP11.07□□□□□ -0.64
TDP1-210ENST00000554976 EXOC5O00471 708 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 STAP2Q9UGK3 403 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 EXOC6BQ9Y2D4 811 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 BRWD3Q6RI45 1802 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 A0A1B0GUL6 1792 aa11.07□□□□□ -0.64
TDP1-210ENST00000554976 ANP32AP39687 249 aaKnown RBP11.06□□□□□ -0.64
TDP1-210ENST00000554976 AIMP1Q12904 312 aaKnown RBP11.06□□□□□ -0.64
TDP1-210ENST00000554976 ATRNO75882 1429 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 A1BGP04217 495 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 RABL6Q3YEC7 729 aaPredicted RBP11.06□□□□□ -0.64
TDP1-210ENST00000554976 COL24A1Q17RW2 1714 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 AOX1Q06278 1338 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 RAB11FIP3O75154 756 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 TTLL7Q6ZT98 887 aa11.06□□□□□ -0.64
TDP1-210ENST00000554976 ARAP2Q8WZ64 1704 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 CYP19A1P11511 503 aaPredicted RBP11.05□□□□□ -0.64
TDP1-210ENST00000554976 RFX5P48382 616 aaPredicted RBP11.05□□□□□ -0.64
TDP1-210ENST00000554976 EPHA10Q5JZY3 1008 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 MYD88Q99836 296 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 LRRCC1Q9C099 1032 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 PDE1AP54750 535 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 RIC3Q7Z5B4 369 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 BICC1Q9H694 974 aaKnown RBP11.05□□□□□ -0.64
TDP1-210ENST00000554976 C4AP0C0L4 1744 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 C4BP0C0L5 1744 aa11.05□□□□□ -0.64
TDP1-210ENST00000554976 NUTM2BA6NNL0 878 aaPredicted RBP11.04□□□□□ -0.64
TDP1-210ENST00000554976 NUTM2EB1AL46 878 aaPredicted RBP11.04□□□□□ -0.64
TDP1-210ENST00000554976 NUTM2AQ8IVF1 878 aaPredicted RBP11.04□□□□□ -0.64
TDP1-210ENST00000554976 H7C1W4 665 aa11.04□□□□□ -0.64
TDP1-210ENST00000554976 DDB1Q16531 1140 aa11.04□□□□□ -0.64
TDP1-210ENST00000554976 TBC1D9Q6ZT07 1266 aa11.04□□□□□ -0.64
TDP1-210ENST00000554976 DNAJC10Q8IXB1 793 aa11.04□□□□□ -0.64
TDP1-210ENST00000554976 SRGAP3O43295 1099 aa11.03□□□□□ -0.64
TDP1-210ENST00000554976 PTCD1O75127 700 aaKnown RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 RBM25P49756 843 aaKnown RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 ISCA1Q9BUE6 129 aa11.03□□□□□ -0.64
TDP1-210ENST00000554976 TEX13AQ9BXU3 409 aaPredicted RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 SDSP20132 328 aa11.03□□□□□ -0.64
TDP1-210ENST00000554976 FOXO4P98177 505 aa11.03□□□□□ -0.64
TDP1-210ENST00000554976 NPM2Q86SE8 214 aaKnown RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 RHPN1Q8TCX5 695 aa11.03□□□□□ -0.64
TDP1-210ENST00000554976 DAXXQ9UER7 740 aaPredicted RBP11.03□□□□□ -0.64
TDP1-210ENST00000554976 PRIM1P49642 420 aaKnown RBP11.02□□□□□ -0.65
TDP1-210ENST00000554976 PI4K2BQ8TCG2 481 aa11.02□□□□□ -0.65
TDP1-210ENST00000554976 DEKP35659 375 aaKnown RBP11.02□□□□□ -0.65
TDP1-210ENST00000554976 KIF2CQ99661 725 aa11.02□□□□□ -0.65
TDP1-210ENST00000554976 C9orf78Q9NZ63 289 aaPredicted RBP11.02□□□□□ -0.65
TDP1-210ENST00000554976 CDC45O75419 566 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 NEXNQ0ZGT2 675 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 TRIM28Q13263 835 aaKnown RBP11.01□□□□□ -0.65
TDP1-210ENST00000554976 SASH1O94885 1247 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 MX1P20591 662 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 INTS5Q6P9B9 1019 aaKnown RBP11.01□□□□□ -0.65
TDP1-210ENST00000554976 KIF1BPQ96EK5 621 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 DDRGK1Q96HY6 314 aa11.01□□□□□ -0.65
TDP1-210ENST00000554976 SPEF2Q9C093 1822 aa11□□□□□ -0.65
TDP1-210ENST00000554976 HDAC5Q9UQL6 1122 aa11□□□□□ -0.65
TDP1-210ENST00000554976 ONECUT3O60422 494 aaPredicted RBP11□□□□□ -0.65
TDP1-210ENST00000554976 CCDC191Q8NCU4 936 aa11□□□□□ -0.65
TDP1-210ENST00000554976 PA2G4Q9UQ80 394 aaKnown RBP11□□□□□ -0.65
TDP1-210ENST00000554976 MAP3K15Q6ZN16 1313 aa11□□□□□ -0.65
TDP1-210ENST00000554976 ATP5J2-PTCD1G3V325 749 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 SURF6O75683 361 aaKnown RBP10.99□□□□□ -0.65
TDP1-210ENST00000554976 HSPA1LP34931 641 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 C8orf37Q96NL8 207 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 COPRSQ9NQ92 184 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 PALLDQ8WX93 1383 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 COL4A1P02462 1669 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 APBB1O00213 710 aa10.99□□□□□ -0.65
TDP1-210ENST00000554976 PTPN12Q05209 780 aaKnown RBP10.99□□□□□ -0.65
TDP1-210ENST00000554976 TCIRG1Q13488 830 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 ITPK1Q13572 414 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms