RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 C14orf37Q86TY3 774 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 SENP3Q9H4L4 574 aaPredicted RBP11.23□□□□□ -0.61
SIX4-202ENST00000554079 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.23□□□□□ -0.61
SIX4-202ENST00000554079 PTCH1Q13635 1447 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 IPO8O15397 1037 aaKnown RBP11.23□□□□□ -0.61
SIX4-202ENST00000554079 TADA3O75528 432 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 ZSCAN22P10073 491 aaPredicted RBP11.23□□□□□ -0.61
SIX4-202ENST00000554079 SKILP12757 684 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 SDSP20132 328 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 NBPF9Q3BBW0 867 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 CCDC158Q5M9N0 1113 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 C1orf115Q9H7X2 142 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 TRMT1Q9NXH9 659 aaKnown RBP11.23□□□□□ -0.61
SIX4-202ENST00000554079 BIRC2Q13490 618 aa11.22□□□□□ -0.61
SIX4-202ENST00000554079 TPRNQ4KMQ1 711 aa11.22□□□□□ -0.61
SIX4-202ENST00000554079 CCDC34Q96HJ3 373 aa11.22□□□□□ -0.61
SIX4-202ENST00000554079 BSDC1Q9NW68 430 aaPredicted RBP11.22□□□□□ -0.61
SIX4-202ENST00000554079 DUOX2Q9NRD8 1548 aa11.22□□□□□ -0.61
SIX4-202ENST00000554079 KIAA1210Q9ULL0 1709 aa11.22□□□□□ -0.61
SIX4-202ENST00000554079 ERC2O15083 957 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 FIBPO43427 364 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 SCP2P22307 547 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 ANO6Q4KMQ2 910 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 NBPF11Q86T75 865 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 KAT2BQ92831 832 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 IL17RAQ96F46 866 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 BORCS6Q96GS4 357 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 FAXDC2Q96IV6 333 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 CALR3Q96L12 384 aaKnown RBP11.21□□□□□ -0.61
SIX4-202ENST00000554079 CARD14Q9BXL6 1004 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 FUT8Q9BYC5 575 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 MKRN1Q9UHC7 482 aaKnown RBP11.21□□□□□ -0.61
SIX4-202ENST00000554079 CD109Q6YHK3 1445 aa11.21□□□□□ -0.61
SIX4-202ENST00000554079 IQGAP3Q86VI3 1631 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 RAPGEF6Q8TEU7 1601 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 SNW1Q13573 536 aaKnown RBP11.21□□□□□ -0.62
SIX4-202ENST00000554079 MAP3K11Q16584 847 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 CASC1Q6TDU7 716 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 FANCAO15360 1455 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 NUP153P49790 1475 aaKnown RBP11.21□□□□□ -0.62
SIX4-202ENST00000554079 ERVK-7P63135 1459 aa11.21□□□□□ -0.62
SIX4-202ENST00000554079 YTHDC2Q9H6S0 1430 aaKnown RBP11.21□□□□□ -0.62
SIX4-202ENST00000554079 MSH6P52701 1360 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 TTC21BQ7Z4L5 1316 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 A0A087WUV0 522 aaPredicted RBP11.2□□□□□ -0.62
SIX4-202ENST00000554079 CCDC69A6NI79 296 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 SGSM2O43147 1006 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 ZRSR1Q15695 479 aaKnown RBP11.2□□□□□ -0.62
SIX4-202ENST00000554079 KCNV1Q6PIU1 500 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 SARM1Q6SZW1 724 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 DNAAF4Q8WXU2 420 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 UBXN4Q92575 508 aa11.2□□□□□ -0.62
SIX4-202ENST00000554079 INO80Q9ULG1 1556 aaPredicted RBP11.2□□□□□ -0.62
SIX4-202ENST00000554079 SMC2O95347 1197 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 F13A1P00488 732 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 ZKSCAN8Q15776 578 aaPredicted RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 ALDH1L2Q3SY69 923 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 RBM43Q6ZSC3 357 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 NOL8Q76FK4 1167 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 STAG1Q8WVM7 1258 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 MRFAP1L1Q96HT8 127 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 TACO1Q9BSH4 297 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 ANKRD65E5RJM6 399 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 TPM1P09493 284 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 CALRP27797 417 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 PLEKHO1Q53GL0 409 aaPredicted RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 CWC27Q6UX04 472 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 LRRC31Q6UY01 552 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 PPP1R13BQ96KQ4 1090 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 SRRTQ9BXP5 876 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 NUP62CLQ9H1M0 184 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 PALD1Q9ULE6 856 aa11.19□□□□□ -0.62
SIX4-202ENST00000554079 SETD1AO15047 1707 aaKnown RBP11.19□□□□□ -0.62
SIX4-202ENST00000554079 ARID3CA6NKF2 412 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 EFCAB8A8MWE9 144 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 HNRNPH1P31943 449 aaKnown RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 E4F1Q66K89 784 aaPredicted RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 C16orf71Q8IYS4 520 aaPredicted RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 OTUD7AQ8TE49 926 aaPredicted RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 MIEF2Q96C03 454 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 A1CFQ9NQ94 594 aaKnown RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 ARHGEF40Q8TER5 1519 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 TROQ12816 1431 aaPredicted RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 ANKRD33BA6NCL7 494 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 MAP2K7O14733 419 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 ANAPC15P60006 121 aa11.18□□□□□ -0.62
SIX4-202ENST00000554079 CFDP1Q9UEE9 299 aaPredicted RBP11.18□□□□□ -0.62
SIX4-202ENST00000554079 IL16Q14005 1332 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 PHLPP2Q6ZVD8 1323 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 TRAPPC8Q9Y2L5 1435 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 MYO3AQ8NEV4 1616 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 STX6O43752 255 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 TUBB4AP04350 444 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 FAM69CQ0P6D2 419 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 MICALL1Q8N3F8 863 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 DCTPP1Q9H773 170 aa11.17□□□□□ -0.62
SIX4-202ENST00000554079 PSDA5PKW4 1024 aaPredicted RBP11.16□□□□□ -0.62
SIX4-202ENST00000554079 TTC36A6NLP5 189 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 LIG1P18858 919 aa11.16□□□□□ -0.62
SIX4-202ENST00000554079 MNAT1P51948 309 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms