RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 CNTNAP4Q9C0A0 1308 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 CRKLP46109 303 aaKnown RBP12.45□□□□□ -0.42
TMEM260-204ENST00000553335 KCNQ4P56696 695 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 RC3H1Q5TC82 1133 aaKnown RBP12.45□□□□□ -0.42
TMEM260-204ENST00000553335 LINC00116Q8NCU8 138 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 SSH1Q8WYL5 1049 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 LRRC4BQ9NT99 713 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 CCDC87Q9NVE4 849 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 HYPKQ9NX55 129 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 CHPF2Q9P2E5 772 aa12.45□□□□□ -0.42
TMEM260-204ENST00000553335 FARP1Q9Y4F1 1045 aaPredicted RBP12.45□□□□□ -0.42
TMEM260-204ENST00000553335 UBR3Q6ZT12 1888 aa12.44□□□□□ -0.42
TMEM260-204ENST00000553335 TCERG1O14776 1098 aaKnown RBP12.44□□□□□ -0.42
TMEM260-204ENST00000553335 A1BGP04217 495 aa12.44□□□□□ -0.42
TMEM260-204ENST00000553335 MYL6BP14649 208 aa12.44□□□□□ -0.42
TMEM260-204ENST00000553335 CANXP27824 592 aaKnown RBP12.44□□□□□ -0.42
TMEM260-204ENST00000553335 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
TMEM260-204ENST00000553335 AK7Q96M32 723 aa12.44□□□□□ -0.42
TMEM260-204ENST00000553335 STK24Q9Y6E0 443 aa12.44□□□□□ -0.42
TMEM260-204ENST00000553335 KIF16BQ96L93 1317 aa12.43□□□□□ -0.42
TMEM260-204ENST00000553335 IL6STP40189 918 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-204ENST00000553335 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-204ENST00000553335 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.43□□□□□ -0.42
TMEM260-204ENST00000553335 BCL2L13Q9BXK5 485 aa12.43□□□□□ -0.42
TMEM260-204ENST00000553335 ZBTB1Q9Y2K1 713 aa12.43□□□□□ -0.42
TMEM260-204ENST00000553335 QSER1Q2KHR3 1735 aa12.42□□□□□ -0.42
TMEM260-204ENST00000553335 BCAR3O75815 825 aa12.42□□□□□ -0.42
TMEM260-204ENST00000553335 PDIA6Q15084 440 aa12.42□□□□□ -0.42
TMEM260-204ENST00000553335 INTS5Q6P9B9 1019 aaKnown RBP12.42□□□□□ -0.42
TMEM260-204ENST00000553335 TSPYL2Q9H2G4 693 aaPredicted RBP12.42□□□□□ -0.42
TMEM260-204ENST00000553335 RTCBQ9Y3I0 505 aaKnown RBP12.42□□□□□ -0.42
TMEM260-204ENST00000553335 TUBGCP6Q96RT7 1819 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 A0A087WZG4 1122 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 NBPF26B4DH59 902 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 GNPATO15228 680 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 IPO8O15397 1037 aaKnown RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 RPS6KA4O75676 772 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 DDX58O95786 925 aaKnown RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 ANXA1P04083 346 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 PIP4K2AP48426 406 aaPredicted RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 NBPF14Q5TI25 921 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 NBPF10Q6P3W6 841 aaKnown RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 NBPF15Q8N660 670 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 PHAXQ9H814 394 aaKnown RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 ZNF330Q9Y3S2 320 aaPredicted RBP12.41□□□□□ -0.42
TMEM260-204ENST00000553335 ARFGEF2Q9Y6D5 1785 aa12.41□□□□□ -0.42
TMEM260-204ENST00000553335 PTPRCP08575 1304 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 NUP98P52948 1817 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 AIMP1Q12904 312 aaKnown RBP12.4□□□□□ -0.42
TMEM260-204ENST00000553335 FLIIQ13045 1269 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 PROSER3Q2NL68 480 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 COPS6Q7L5N1 327 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
TMEM260-204ENST00000553335 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 NOB1Q9ULX3 412 aaKnown RBP12.4□□□□□ -0.42
TMEM260-204ENST00000553335 BCORQ6W2J9 1755 aa12.4□□□□□ -0.42
TMEM260-204ENST00000553335 C4AP0C0L4 1744 aa12.4□□□□□ -0.43
TMEM260-204ENST00000553335 MS4A1P11836 297 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 EIF5P55010 431 aaKnown RBP12.39□□□□□ -0.43
TMEM260-204ENST00000553335 FKBP5Q13451 457 aaPredicted RBP12.39□□□□□ -0.43
TMEM260-204ENST00000553335 TRAPPC3LQ5T215 181 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 ZKSCAN2Q63HK3 967 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 KIF6Q6ZMV9 814 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 G2E3Q7L622 706 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 FLAD1Q8NFF5 587 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 XAGE3Q8WTP9 111 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 ARHGAP45Q92619 1136 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 ARXQ96QS3 562 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 API5Q9BZZ5 524 aaKnown RBP12.39□□□□□ -0.43
TMEM260-204ENST00000553335 RYDENQ9NUL5 291 aaKnown RBP12.39□□□□□ -0.43
TMEM260-204ENST00000553335 COL15A1P39059 1388 aa12.39□□□□□ -0.43
TMEM260-204ENST00000553335 ANKRD36CQ5JPF3 1778 aa12.38□□□□□ -0.43
TMEM260-204ENST00000553335 SSFA2P28290 1259 aa12.38□□□□□ -0.43
TMEM260-204ENST00000553335 SLC15A2Q16348 729 aa12.38□□□□□ -0.43
TMEM260-204ENST00000553335 LRP10Q7Z4F1 713 aa12.38□□□□□ -0.43
TMEM260-204ENST00000553335 ZNF467Q7Z7K2 595 aaPredicted RBP12.38□□□□□ -0.43
TMEM260-204ENST00000553335 DZIP3Q86Y13 1208 aaKnown RBP12.38□□□□□ -0.43
TMEM260-204ENST00000553335 TFCP2L1Q9NZI6 479 aa12.38□□□□□ -0.43
TMEM260-204ENST00000553335 AFDNP55196 1824 aaKnown RBP12.37□□□□□ -0.43
TMEM260-204ENST00000553335 PSDA5PKW4 1024 aaPredicted RBP12.37□□□□□ -0.43
TMEM260-204ENST00000553335 PRKAR2AP13861 404 aaKnown RBP12.37□□□□□ -0.43
TMEM260-204ENST00000553335 RFC4P35249 363 aa12.37□□□□□ -0.43
TMEM260-204ENST00000553335 ZNF827Q17R98 1081 aa12.37□□□□□ -0.43
TMEM260-204ENST00000553335 ANKRD13DQ6ZTN6 518 aa12.37□□□□□ -0.43
TMEM260-204ENST00000553335 RIC3Q7Z5B4 369 aa12.37□□□□□ -0.43
TMEM260-204ENST00000553335 SUPT16HQ9Y5B9 1047 aaKnown RBP12.37□□□□□ -0.43
TMEM260-204ENST00000553335 SCN7AQ01118 1682 aa12.37□□□□□ -0.43
TMEM260-204ENST00000553335 N4BP2Q86UW6 1770 aaPredicted RBP12.37□□□□□ -0.43
TMEM260-204ENST00000553335 ZPR1O75312 459 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 PHF14O94880 888 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 RRP1P56182 461 aaKnown RBP12.36□□□□□ -0.43
TMEM260-204ENST00000553335 KSR2Q6VAB6 950 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 ATF7IPQ6VMQ6 1270 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 TTLL7Q6ZT98 887 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 PLBD2Q8NHP8 589 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 ARHGEF1Q92888 912 aaKnown RBP12.36□□□□□ -0.43
TMEM260-204ENST00000553335 TBC1D2BQ9UPU7 963 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 MAP3K15Q6ZN16 1313 aa12.36□□□□□ -0.43
TMEM260-204ENST00000553335 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.35□□□□□ -0.43
TMEM260-204ENST00000553335 PI4KAP2A4QPH2 592 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms