RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 CNKSR1Q969H4 720 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 FMNL2Q96PY5 1086 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 SETDB2Q96T68 719 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 CREBZFQ9NS37 354 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 SRGNP10124 158 aa12.25□□□□□ -0.45
SYNE2-209ENST00000553308 PIP4K2AP48426 406 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-209ENST00000553308 ST5P78524 1137 aa12.25□□□□□ -0.45
SYNE2-209ENST00000553308 CNGB1Q14028 1251 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-209ENST00000553308 CEMIPQ8WUJ3 1361 aa12.25□□□□□ -0.45
SYNE2-209ENST00000553308 DZIP3Q86Y13 1208 aaKnown RBP12.24□□□□□ -0.45
SYNE2-209ENST00000553308 MASTLQ96GX5 879 aa12.24□□□□□ -0.45
SYNE2-209ENST00000553308 CNTNAP1P78357 1384 aa12.23□□□□□ -0.45
SYNE2-209ENST00000553308 PRAMEF22A3QJZ6 481 aa12.23□□□□□ -0.45
SYNE2-209ENST00000553308 SOGA3Q5TF21 947 aa12.23□□□□□ -0.45
SYNE2-209ENST00000553308 NPM2Q86SE8 214 aaKnown RBP12.23□□□□□ -0.45
SYNE2-209ENST00000553308 USP16Q9Y5T5 823 aa12.23□□□□□ -0.45
SYNE2-209ENST00000553308 PASKQ96RG2 1323 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 ZNF541Q9H0D2 1346 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 BTBD11A6QL63 1104 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 FOXN1O15353 648 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 NBPF5PQ86XG9 351 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-209ENST00000553308 C7orf43Q8WVR3 580 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 L3MBTL3Q96JM7 780 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-209ENST00000553308 PHACTR3Q96KR7 559 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 TAF1DQ9H5J8 278 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-209ENST00000553308 SCN4AP35499 1836 aa12.22□□□□□ -0.45
SYNE2-209ENST00000553308 NPC1L1Q9UHC9 1359 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 IQCA1LA6NCM1 817 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 PRKAR2BP31323 418 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 CCDC93Q567U6 631 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 OLFM4Q6UX06 510 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 LDHDQ86WU2 507 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 CCER1Q8TC90 406 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-209ENST00000553308 PCNTO95613 3336 aa12.21□□□□□ -0.45
SYNE2-209ENST00000553308 ADAMTSL1Q8N6G6 1762 aa12.2□□□□□ -0.46
SYNE2-209ENST00000553308 NPR1P16066 1061 aa12.2□□□□□ -0.46
SYNE2-209ENST00000553308 RSPH6AQ9H0K4 717 aa12.2□□□□□ -0.46
SYNE2-209ENST00000553308 ZNF277Q9NRM2 450 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-209ENST00000553308 FKBP4Q02790 459 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE2-209ENST00000553308 EAPPQ56P03 285 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-209ENST00000553308 CLEC4GQ6UXB4 293 aa12.19□□□□□ -0.46
SYNE2-209ENST00000553308 ZNF652Q9Y2D9 606 aa12.19□□□□□ -0.46
SYNE2-209ENST00000553308 KLRG2A4D1S0 409 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-209ENST00000553308 TMEM88BA6NKF7 163 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 FAM177BA6PVY3 158 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 NBPF26B4DH59 902 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 ITGBL1O95965 494 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-209ENST00000553308 SNRPA1P09661 255 aaKnown RBP12.18□□□□□ -0.46
SYNE2-209ENST00000553308 VEGFBP49765 207 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 NBPF10Q6P3W6 841 aaKnown RBP12.18□□□□□ -0.46
SYNE2-209ENST00000553308 MCM10Q7L590 875 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 NBPF15Q8N660 670 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 HACL1Q9UJ83 578 aa12.18□□□□□ -0.46
SYNE2-209ENST00000553308 NIP7Q9Y221 180 aaKnown RBP eCLIP12.18□□□□□ -0.46
SYNE2-209ENST00000553308 RNF123Q5XPI4 1314 aa12.17□□□□□ -0.46
SYNE2-209ENST00000553308 EPHX2P34913 555 aa12.17□□□□□ -0.46
SYNE2-209ENST00000553308 SNED1Q8TER0 1413 aa12.17□□□□□ -0.46
SYNE2-209ENST00000553308 LAMB4A4D0S4 1761 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 IARSP41252 1262 aaKnown RBP12.16□□□□□ -0.46
SYNE2-209ENST00000553308 CTCFP49711 727 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-209ENST00000553308 DCTN1Q14203 1278 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 HLFQ16534 295 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 MAP1SQ66K74 1059 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-209ENST00000553308 TPTE2Q6XPS3 522 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 AIDAQ96BJ3 306 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 PRDM10Q9NQV6 1147 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 CLEC11AQ9Y240 323 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 ABCC12Q96J65 1359 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 COL4A5P29400 1685 aa12.16□□□□□ -0.46
SYNE2-209ENST00000553308 FZD9O00144 591 aa12.15□□□□□ -0.46
SYNE2-209ENST00000553308 RTKN2Q8IZC4 609 aa12.15□□□□□ -0.46
SYNE2-209ENST00000553308 SYNE4Q8N205 404 aa12.15□□□□□ -0.46
SYNE2-209ENST00000553308 RTF1Q92541 710 aaKnown RBP12.15□□□□□ -0.46
SYNE2-209ENST00000553308 CFAP53Q96M91 514 aa12.15□□□□□ -0.46
SYNE2-209ENST00000553308 LTBP1Q14766 1721 aa12.14□□□□□ -0.47
SYNE2-209ENST00000553308 RGL2O15211 777 aa12.14□□□□□ -0.47
SYNE2-209ENST00000553308 U2AF1L5P0DN76 240 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-209ENST00000553308 LBX1P52954 281 aa12.14□□□□□ -0.47
SYNE2-209ENST00000553308 U2AF1Q01081 240 aaKnown RBP eCLIP12.14□□□□□ -0.47
SYNE2-209ENST00000553308 CNTROBQ8N137 903 aa12.14□□□□□ -0.47
SYNE2-209ENST00000553308 WBP1LQ9NX94 342 aa12.14□□□□□ -0.47
SYNE2-209ENST00000553308 RASSF10A6NK89 507 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 GTF2E1P29083 439 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-209ENST00000553308 ALDH1B1P30837 517 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 SLC51AQ86UW1 340 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 PNMA8AQ86V59 439 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-209ENST00000553308 NUTM1Q86Y26 1132 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 GPC2Q8N158 579 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 NUDCQ9Y266 331 aa12.13□□□□□ -0.47
SYNE2-209ENST00000553308 HSPA8P11142 646 aaKnown RBP12.12□□□□□ -0.47
SYNE2-209ENST00000553308 DEFB115Q30KQ5 88 aa12.12□□□□□ -0.47
SYNE2-209ENST00000553308 CRY2Q49AN0 593 aa12.12□□□□□ -0.47
SYNE2-209ENST00000553308 NGEFQ8N5V2 710 aa12.12□□□□□ -0.47
SYNE2-209ENST00000553308 PSMD1Q99460 953 aa12.12□□□□□ -0.47
SYNE2-209ENST00000553308 MIS18AQ9NYP9 233 aa12.12□□□□□ -0.47
SYNE2-209ENST00000553308 THSD7BQ9C0I4 1608 aa12.11□□□□□ -0.47
SYNE2-209ENST00000553308 KDM3BQ7LBC6 1761 aa12.11□□□□□ -0.47
SYNE2-209ENST00000553308 FMR1Q06787 632 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNE2-209ENST00000553308 JDP2Q8WYK2 163 aa12.11□□□□□ -0.47
SYNE2-209ENST00000553308 ABT1Q9ULW3 272 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms