RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MPNDQ8N594 471 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 IL17RAQ96F46 866 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 TTC14Q96N46 770 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 CNPY2Q9Y2B0 182 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 DCAF8L1A6NGE4 600 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 TEFQ10587 303 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 ADCK5Q3MIX3 580 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 CNTROBQ8N137 903 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 MAP3K2Q9Y2U5 619 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 ESCO1Q5FWF5 840 aa9.05□□□□□ -0.96
LIMA1-213ENST00000552720 NOL7Q9UMY1 257 aaKnown RBP9.05□□□□□ -0.96
LIMA1-213ENST00000552720 WDR33Q9C0J8 1336 aaKnown RBP9.05□□□□□ -0.96
LIMA1-213ENST00000552720 OFD1O75665 1012 aa9.05□□□□□ -0.96
LIMA1-213ENST00000552720 CASTP20810 708 aaKnown RBP9.05□□□□□ -0.96
LIMA1-213ENST00000552720 SYT1P21579 422 aa9.04□□□□□ -0.96
LIMA1-213ENST00000552720 PSME1Q06323 249 aa9.04□□□□□ -0.96
LIMA1-213ENST00000552720 IFNLR1Q8IU57 520 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-213ENST00000552720 UBE2Q2Q8WVN8 375 aa9.04□□□□□ -0.96
LIMA1-213ENST00000552720 TSPY26PQ9H489 355 aa9.04□□□□□ -0.96
LIMA1-213ENST00000552720 C9orf78Q9NZ63 289 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-213ENST00000552720 AKAP4Q5JQC9 854 aa9.04□□□□□ -0.96
LIMA1-213ENST00000552720 PRPF40BQ6NWY9 871 aaKnown RBP9.04□□□□□ -0.96
LIMA1-213ENST00000552720 SIPA1L3O60292 1781 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 RNMTO43148 476 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 FIBPO43427 364 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 AIMP1Q12904 312 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 HSP90AA2PQ14568 343 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 LMOD2Q6P5Q4 547 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 CCDC83Q8IWF9 413 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 KAZALD1Q96I82 304 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 DIAPH3Q9NSV4 1193 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 DBF4Q9UBU7 674 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 LIMCH1Q9UPQ0 1083 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 R3HCC1Q9Y3T6 440 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 STX6O43752 255 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 GIGYF1O75420 1035 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 GLRX3O76003 335 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 ZSCAN22P10073 491 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 ST3GAL1Q11201 340 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 CLASRPQ8N2M8 674 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 KLHDC4Q8TBB5 520 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 FAM227BQ96M60 508 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 JAKMIP1Q96N16 626 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 ORAI2Q96SN7 254 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 CCDC8Q9H0W5 538 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 HYPKQ9NX55 129 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 TLR7Q9NYK1 1049 aaKnown RBP9.03□□□□□ -0.96
LIMA1-213ENST00000552720 ZKSCAN5Q9Y2L8 839 aa9.03□□□□□ -0.96
LIMA1-213ENST00000552720 C5P01031 1676 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 SASH1O94885 1247 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 HOXB7P09629 217 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 HS1BP3Q53T59 392 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 AACSQ86V21 672 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 NECAB1Q8N987 351 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 SUCLG2Q96I99 432 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 TCEANC2Q96MN5 208 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 SIL1Q9H173 461 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 ECHDC1Q9NTX5 307 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 AXIN2Q9Y2T1 843 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 TTC41PQ6P2S7 1318 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 USP42Q9H9J4 1324 aaKnown RBP9.02□□□□□ -0.97
LIMA1-213ENST00000552720 EPB41L2O43491 1005 aaKnown RBP9.02□□□□□ -0.97
LIMA1-213ENST00000552720 ZNF500O60304 480 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-213ENST00000552720 GJB2P29033 226 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 MTX1Q13505 466 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 PLEKHO1Q53GL0 409 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-213ENST00000552720 EAF2Q96CJ1 260 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-213ENST00000552720 SMC3Q9UQE7 1217 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 TAF6LQ9Y6J9 622 aa9.02□□□□□ -0.97
LIMA1-213ENST00000552720 PHRF1Q9P1Y6 1649 aaKnown RBP9.01□□□□□ -0.97
LIMA1-213ENST00000552720 F13A1P00488 732 aa9.01□□□□□ -0.97
LIMA1-213ENST00000552720 IFIT2P09913 472 aaKnown RBP9.01□□□□□ -0.97
LIMA1-213ENST00000552720 HCLS1P14317 486 aaPredicted RBP9.01□□□□□ -0.97
LIMA1-213ENST00000552720 HSP90AB4PQ58FF6 505 aa9.01□□□□□ -0.97
LIMA1-213ENST00000552720 C1orf141Q5JVX7 400 aa9.01□□□□□ -0.97
LIMA1-213ENST00000552720 KSR2Q6VAB6 950 aa9.01□□□□□ -0.97
LIMA1-213ENST00000552720 ZNF830Q96NB3 372 aaPredicted RBP9.01□□□□□ -0.97
LIMA1-213ENST00000552720 BICC1Q9H694 974 aaKnown RBP9.01□□□□□ -0.97
LIMA1-213ENST00000552720 GCP02774 474 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 DNM1Q05193 864 aaKnown RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 SLC39A6Q13433 755 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 ME3Q16798 604 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 PDZRN4Q6ZMN7 1036 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 PAXIP1Q6ZW49 1069 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 ANKRD24Q8TF21 1146 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 JARID2Q92833 1246 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 SYAP1Q96A49 352 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 PDRG1Q9NUG6 133 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 USP25Q9UHP3 1055 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 TPM2P07951 284 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 PIP4K2AP48426 406 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 RBM10P98175 930 aaKnown RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 NMIQ13287 307 aaPredicted RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 NECTIN1Q15223 517 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 TMEM87AQ8NBN3 555 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 EDC3Q96F86 508 aaKnown RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 MTMR6Q9Y217 621 aa9□□□□□ -0.97
LIMA1-213ENST00000552720 RBM8AQ9Y5S9 174 aaKnown RBP9□□□□□ -0.97
LIMA1-213ENST00000552720 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9□□□□□ -0.97
LIMA1-213ENST00000552720 CCDC171Q6TFL3 1326 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms