RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PDGFAP04085 211 aa9.76□□□□□ -0.85
LIMA1-210ENST00000552045 ITGAEP38570 1179 aa9.76□□□□□ -0.85
LIMA1-210ENST00000552045 SNIP1Q8TAD8 396 aaKnown RBP9.76□□□□□ -0.85
LIMA1-210ENST00000552045 RNF19AQ9NV58 838 aa9.76□□□□□ -0.85
LIMA1-210ENST00000552045 GDF9O60383 454 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 DAB2P98082 770 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 RELBQ01201 579 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 ENOX2Q16206 610 aaKnown RBP9.75□□□□□ -0.85
LIMA1-210ENST00000552045 C1orf53Q5VUE5 145 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 TMEM214Q6NUQ4 689 aaKnown RBP9.75□□□□□ -0.85
LIMA1-210ENST00000552045 RHBDD1Q8TEB9 315 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 ZFAND3Q9H8U3 227 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 MRS2Q9HD23 443 aa9.75□□□□□ -0.85
LIMA1-210ENST00000552045 SORBS3O60504 671 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 GTF2E1P29083 439 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-210ENST00000552045 WDR4P57081 412 aaKnown RBP9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PRR20EP86478 221 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PRR20CP86479 221 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PRR20DP86480 221 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PRR20BP86481 221 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PRR20AP86496 221 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 HDLBPQ00341 1268 aaKnown RBP9.74□□□□□ -0.85
LIMA1-210ENST00000552045 FOXC1Q12948 553 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 SETDB2Q96T68 719 aa9.74□□□□□ -0.85
LIMA1-210ENST00000552045 ZNF395Q9H8N7 513 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-210ENST00000552045 PNMA6FA0A0J9YX94 578 aa9.73□□□□□ -0.85
LIMA1-210ENST00000552045 ERCC5P28715 1186 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-210ENST00000552045 ALG1LQ6GMV1 187 aa9.73□□□□□ -0.85
LIMA1-210ENST00000552045 TREML1Q86YW5 311 aa9.73□□□□□ -0.85
LIMA1-210ENST00000552045 TMEM87AQ8NBN3 555 aa9.73□□□□□ -0.85
LIMA1-210ENST00000552045 TIMP2P16035 220 aa9.72□□□□□ -0.85
LIMA1-210ENST00000552045 PCSK2P16519 638 aa9.72□□□□□ -0.85
LIMA1-210ENST00000552045 TXLNAP40222 546 aa9.72□□□□□ -0.85
LIMA1-210ENST00000552045 PSMD2Q13200 908 aa9.72□□□□□ -0.85
LIMA1-210ENST00000552045 SREK1Q8WXA9 508 aaKnown RBP9.72□□□□□ -0.85
LIMA1-210ENST00000552045 GRIP2Q9C0E4 1043 aa9.72□□□□□ -0.85
LIMA1-210ENST00000552045 GPC1P35052 558 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 NAALADL2Q58DX5 795 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 TRIM67Q6ZTA4 783 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 GPR152Q8TDT2 470 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 DRC1Q96MC2 740 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 BCS1LQ9Y276 419 aa9.71□□□□□ -0.86
LIMA1-210ENST00000552045 J3QL48 77 aa9.7□□□□□ -0.86
LIMA1-210ENST00000552045 GNASQ5JWF2 1037 aa9.7□□□□□ -0.86
LIMA1-210ENST00000552045 C9orf131Q5VYM1 1079 aa9.7□□□□□ -0.86
LIMA1-210ENST00000552045 NUDT16Q96DE0 195 aaKnown RBP9.7□□□□□ -0.86
LIMA1-210ENST00000552045 CSRNP1Q96S65 589 aa9.7□□□□□ -0.86
LIMA1-210ENST00000552045 VTI1BQ9UEU0 232 aa9.7□□□□□ -0.86
LIMA1-210ENST00000552045 TNFRSF10AO00220 468 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 PLA2G4AP47712 749 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 SLC27A3Q5K4L6 730 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 FBF1Q8TES7 1133 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 C7orf43Q8WVR3 580 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 CFHR5Q9BXR6 569 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 GGNBP2Q9H3C7 697 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 TOR4AQ9NXH8 423 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 FAM13BQ9NYF5 915 aa9.69□□□□□ -0.86
LIMA1-210ENST00000552045 TTC24A2A3L6 582 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-210ENST00000552045 GNA15P30679 374 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 RNF144AP50876 292 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-210ENST00000552045 ORC1Q13415 861 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 HIF1AQ16665 826 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 C4orf17Q53FE4 359 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 METTL16Q86W50 562 aaKnown RBP9.68□□□□□ -0.86
LIMA1-210ENST00000552045 CYP4X1Q8N118 509 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 MEIOBQ8N635 442 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 RHPN1Q8TCX5 695 aa9.68□□□□□ -0.86
LIMA1-210ENST00000552045 METTL5Q9NRN9 209 aaKnown RBP9.68□□□□□ -0.86
LIMA1-210ENST00000552045 EIF1AYO14602 144 aaKnown RBP9.67□□□□□ -0.86
LIMA1-210ENST00000552045 MICAL2O94851 1124 aa9.67□□□□□ -0.86
LIMA1-210ENST00000552045 RPLP1P05386 114 aaKnown RBP9.67□□□□□ -0.86
LIMA1-210ENST00000552045 NEFLP07196 543 aa9.67□□□□□ -0.86
LIMA1-210ENST00000552045 C8orf34Q49A92 452 aa9.67□□□□□ -0.86
LIMA1-210ENST00000552045 TTC16Q8NEE8 873 aa9.67□□□□□ -0.86
LIMA1-210ENST00000552045 ZDHHC3Q9NYG2 299 aa9.67□□□□□ -0.86
LIMA1-210ENST00000552045 TGFBR3LH3BV60 316 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 FANCCQ00597 558 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 RAD51AP2Q09MP3 1159 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 NBPF1Q3BBV0 1214 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 PIK3R5Q8WYR1 880 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 DNAJC25Q9H1X3 360 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 PDZRN3Q9UPQ7 1066 aa9.66□□□□□ -0.86
LIMA1-210ENST00000552045 A6NHS1 94 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 NT5DC4Q86YG4 428 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 RNF34Q969K3 372 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 AIDAQ96BJ3 306 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 SUSD3Q96L08 255 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 FRMD6Q96NE9 622 aa9.65□□□□□ -0.86
LIMA1-210ENST00000552045 INSM2Q96T92 566 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-210ENST00000552045 TSEN34Q9BSV6 310 aaKnown RBP9.65□□□□□ -0.86
LIMA1-210ENST00000552045 OPLAHO14841 1288 aa9.64□□□□□ -0.87
LIMA1-210ENST00000552045 SMPD1P17405 629 aa9.64□□□□□ -0.87
LIMA1-210ENST00000552045 SF3A1Q15459 793 aaKnown RBP9.64□□□□□ -0.87
LIMA1-210ENST00000552045 IER5Q5VY09 327 aa9.64□□□□□ -0.87
LIMA1-210ENST00000552045 DMGDHQ9UI17 866 aaKnown RBP9.64□□□□□ -0.87
LIMA1-210ENST00000552045 GPC6Q9Y625 555 aaPredicted RBP9.64□□□□□ -0.87
LIMA1-210ENST00000552045 AK5Q9Y6K8 562 aa9.64□□□□□ -0.87
LIMA1-210ENST00000552045 SPATA31C2B4DYI2 1134 aa9.63□□□□□ -0.87
LIMA1-210ENST00000552045 SPINT1O43278 529 aa9.63□□□□□ -0.87
LIMA1-210ENST00000552045 ZNF76P36508 570 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms