RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 CD97P48960 835 aa4.77□□□□□ -1.65
LIMA1-209ENST00000552008 SH3D19Q5HYK7 790 aa4.77□□□□□ -1.65
LIMA1-209ENST00000552008 C20orf204Q6ZNR8 217 aa4.77□□□□□ -1.65
LIMA1-209ENST00000552008 KRTAP4-11Q9BYQ6 195 aa4.77□□□□□ -1.65
LIMA1-209ENST00000552008 GP2P55259 537 aaKnown RBP4.76□□□□□ -1.65
LIMA1-209ENST00000552008 NR1H3Q13133 447 aa4.76□□□□□ -1.65
LIMA1-209ENST00000552008 CCDC85AQ96PX6 553 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-209ENST00000552008 ZDHHC3Q9NYG2 299 aa4.76□□□□□ -1.65
LIMA1-209ENST00000552008 ZNF330Q9Y3S2 320 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-209ENST00000552008 BICDL1Q6ZP65 573 aa4.75□□□□□ -1.65
LIMA1-209ENST00000552008 PRR23CQ6ZRP0 262 aa4.75□□□□□ -1.65
LIMA1-209ENST00000552008 FSTP19883 344 aa4.74□□□□□ -1.65
LIMA1-209ENST00000552008 SLC51AQ86UW1 340 aa4.74□□□□□ -1.65
LIMA1-209ENST00000552008 FMR1NBQ8N0W7 255 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-209ENST00000552008 WFDC12Q8WWY7 111 aa4.74□□□□□ -1.65
LIMA1-209ENST00000552008 SLC30A3Q99726 388 aa4.74□□□□□ -1.65
LIMA1-209ENST00000552008 IREB2P48200 963 aaKnown RBP4.73□□□□□ -1.65
LIMA1-209ENST00000552008 NEUROD1Q13562 356 aa4.73□□□□□ -1.65
LIMA1-209ENST00000552008 INHAP05111 366 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 NOS3P29474 1203 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 RFC5P40937 340 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 SMTNP53814 917 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 USP4Q13107 963 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 ZNF295-AS1Q8N0V1 137 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 MEGF10Q96KG7 1140 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 KRTAP4-5Q9BYR2 181 aa4.72□□□□□ -1.65
LIMA1-209ENST00000552008 JPH1Q9HDC5 661 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-209ENST00000552008 KIAA1324LA8MWY0 1029 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-209ENST00000552008 MED26O95402 600 aa4.71□□□□□ -1.66
LIMA1-209ENST00000552008 SCNN1DP51172 638 aa4.71□□□□□ -1.66
LIMA1-209ENST00000552008 GDF10P55107 478 aa4.71□□□□□ -1.66
LIMA1-209ENST00000552008 SPEM2Q0P670 501 aa4.71□□□□□ -1.66
LIMA1-209ENST00000552008 SFSWAPQ12872 951 aaKnown RBP4.71□□□□□ -1.66
LIMA1-209ENST00000552008 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
LIMA1-209ENST00000552008 RAB44Q7Z6P3 723 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-209ENST00000552008 LRRC69Q6ZNQ3 347 aa4.7□□□□□ -1.66
LIMA1-209ENST00000552008 DMRTC2Q8IXT2 367 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-209ENST00000552008 NUDT8Q8WV74 236 aa4.7□□□□□ -1.66
LIMA1-209ENST00000552008 GJD4Q96KN9 370 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-209ENST00000552008 CABP1Q9NZU7 370 aa4.7□□□□□ -1.66
LIMA1-209ENST00000552008 CEP126Q9P2H0 1117 aa4.7□□□□□ -1.66
LIMA1-209ENST00000552008 DOLKQ9UPQ8 538 aa4.7□□□□□ -1.66
LIMA1-209ENST00000552008 CDK2AP1O14519 115 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 TXLNAP40222 546 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 AFF1P51825 1210 aaKnown RBP4.68□□□□□ -1.66
LIMA1-209ENST00000552008 TBC1D8BQ0IIM8 1120 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 TSGA10IPQ3SY00 556 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 KRTAP17-1Q9BYP8 105 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 SLC24A3Q9HC58 644 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 SERTAD1Q9UHV2 236 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 IQSEC3Q9UPP2 1182 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-209ENST00000552008 PARP3Q9Y6F1 533 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 USP3Q9Y6I4 520 aa4.68□□□□□ -1.66
LIMA1-209ENST00000552008 PTCD1O75127 700 aaKnown RBP4.67□□□□□ -1.66
LIMA1-209ENST00000552008 TMEM259Q4ZIN3 620 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 OXLD1Q5BKU9 147 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 ILDR2Q71H61 639 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 SIRT1Q96EB6 747 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 UBE2OQ9C0C9 1292 aaKnown RBP4.67□□□□□ -1.66
LIMA1-209ENST00000552008 NEUROD4Q9HD90 331 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 SLC6A14Q9UN76 642 aa4.67□□□□□ -1.66
LIMA1-209ENST00000552008 A6NJY4 79 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 ADAMTS4O75173 837 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 TGFB1P01137 390 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 MTFR1Q15390 333 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 NEUROD2Q15784 382 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 OGFOD2Q6N063 350 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 PSAPL1Q6NUJ1 521 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 FBXO11Q86XK2 927 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 DTWD1Q8N5C7 304 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 IGFLR1Q9H665 355 aa4.66□□□□□ -1.66
LIMA1-209ENST00000552008 C8AP07357 584 aa4.65□□□□□ -1.67
LIMA1-209ENST00000552008 SPINK2P20155 84 aa4.65□□□□□ -1.67
LIMA1-209ENST00000552008 IGF2-ASQ6U949 168 aa4.65□□□□□ -1.67
LIMA1-209ENST00000552008 DZIP1LQ8IYY4 767 aaKnown RBP4.65□□□□□ -1.67
LIMA1-209ENST00000552008 BHMTQ93088 406 aa4.65□□□□□ -1.67
LIMA1-209ENST00000552008 SLC4A9Q96Q91 983 aa4.65□□□□□ -1.67
LIMA1-209ENST00000552008 GSC2O15499 205 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 RGS9O75916 674 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-209ENST00000552008 IGLV1-40P01703 118 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 MSL1Q68DK7 614 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 DDRGK1Q96HY6 314 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 BRD7Q9NPI1 651 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 ADGRE2Q9UHX3 823 aa4.64□□□□□ -1.67
LIMA1-209ENST00000552008 GPC6Q9Y625 555 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-209ENST00000552008 EML1O00423 815 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 SOCS7O14512 581 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 GPR37L1O60883 481 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 KCNQ4P56696 695 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 PHTF2Q8N3S3 785 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 ZDHHC1Q8WTX9 485 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 AKTIPQ9H8T0 292 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 NAGPAQ9UK23 515 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 KCNH4Q9UQ05 1017 aa4.63□□□□□ -1.67
LIMA1-209ENST00000552008 TMEM229AB2RXF0 380 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 WNT11O96014 354 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 GRIK1P39086 918 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 TMEM132AQ24JP5 1023 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 SLFNL1Q499Z3 407 aa4.62□□□□□ -1.67
LIMA1-209ENST00000552008 INTS5Q6P9B9 1019 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms