RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 PRPF40BQ6NWY9 871 aaKnown RBP18.33■□□□□ 0.52
CDX2-202ENST00000548877 CNBD1Q8NA66 436 aa18.33■□□□□ 0.52
CDX2-202ENST00000548877 TAF1DQ9H5J8 278 aaPredicted RBP18.33■□□□□ 0.52
CDX2-202ENST00000548877 ZNF219Q9P2Y4 722 aaPredicted RBP18.33■□□□□ 0.52
CDX2-202ENST00000548877 ITGBL1O95965 494 aaPredicted RBP18.32■□□□□ 0.52
CDX2-202ENST00000548877 CCDC24Q8N4L8 307 aa18.32■□□□□ 0.52
CDX2-202ENST00000548877 ADAMTSL1Q8N6G6 1762 aa18.32■□□□□ 0.52
CDX2-202ENST00000548877 KLRG2A4D1S0 409 aaPredicted RBP18.31■□□□□ 0.52
CDX2-202ENST00000548877 ST5P78524 1137 aa18.31■□□□□ 0.52
CDX2-202ENST00000548877 TEFQ10587 303 aa18.31■□□□□ 0.52
CDX2-202ENST00000548877 CEMIPQ8WUJ3 1361 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 GNAT3A8MTJ3 354 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 PER1O15534 1290 aaPredicted RBP18.3■□□□□ 0.52
CDX2-202ENST00000548877 A1BGP04217 495 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 CTCFP49711 727 aaPredicted RBP18.3■□□□□ 0.52
CDX2-202ENST00000548877 CLEC4GQ6UXB4 293 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 GAS2L2Q8NHY3 880 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 FMNL2Q96PY5 1086 aa18.3■□□□□ 0.52
CDX2-202ENST00000548877 COL3A1P02461 1466 aaPredicted RBP18.3■□□□□ 0.52
CDX2-202ENST00000548877 TMEM88BA6NKF7 163 aa18.29■□□□□ 0.52
CDX2-202ENST00000548877 RGL2O15211 777 aa18.29■□□□□ 0.52
CDX2-202ENST00000548877 VEGFBP49765 207 aa18.28■□□□□ 0.52
CDX2-202ENST00000548877 CCDC93Q567U6 631 aa18.28■□□□□ 0.52
CDX2-202ENST00000548877 WBP1LQ9NX94 342 aa18.28■□□□□ 0.52
CDX2-202ENST00000548877 FKBP4Q02790 459 aaKnown RBP eCLIP18.27■□□□□ 0.52
CDX2-202ENST00000548877 DZIP3Q86Y13 1208 aaKnown RBP18.27■□□□□ 0.52
CDX2-202ENST00000548877 NPR1P16066 1061 aa18.26■□□□□ 0.51
CDX2-202ENST00000548877 NPM2Q86SE8 214 aaKnown RBP18.26■□□□□ 0.51
CDX2-202ENST00000548877 AIDAQ96BJ3 306 aa18.26■□□□□ 0.51
CDX2-202ENST00000548877 ZNF330Q9Y3S2 320 aaPredicted RBP18.26■□□□□ 0.51
CDX2-202ENST00000548877 RASSF10A6NK89 507 aa18.25■□□□□ 0.51
CDX2-202ENST00000548877 HACL1Q9UJ83 578 aa18.25■□□□□ 0.51
CDX2-202ENST00000548877 NPC1L1Q9UHC9 1359 aa18.25■□□□□ 0.51
CDX2-202ENST00000548877 FZD9O00144 591 aa18.24■□□□□ 0.51
CDX2-202ENST00000548877 NPHP1O15259 732 aa18.24■□□□□ 0.51
CDX2-202ENST00000548877 PNMA8AQ86V59 439 aaPredicted RBP18.24■□□□□ 0.51
CDX2-202ENST00000548877 NBPF5PQ86XG9 351 aaPredicted RBP18.24■□□□□ 0.51
CDX2-202ENST00000548877 RTKN2Q8IZC4 609 aa18.24■□□□□ 0.51
CDX2-202ENST00000548877 KIF7Q2M1P5 1343 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 ZNF541Q9H0D2 1346 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 KCNQ3O43525 872 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 EPHX2P34913 555 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 ZNF652Q9Y2D9 606 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 USP16Q9Y5T5 823 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 SNED1Q8TER0 1413 aa18.23■□□□□ 0.51
CDX2-202ENST00000548877 BTBD11A6QL63 1104 aa18.22■□□□□ 0.51
CDX2-202ENST00000548877 TPTE2Q6XPS3 522 aa18.22■□□□□ 0.51
CDX2-202ENST00000548877 LBX1P52954 281 aa18.21■□□□□ 0.51
CDX2-202ENST00000548877 DEFB115Q30KQ5 88 aa18.21■□□□□ 0.51
CDX2-202ENST00000548877 ZNF277Q9NRM2 450 aaPredicted RBP18.21■□□□□ 0.51
CDX2-202ENST00000548877 HSPA8P11142 646 aaKnown RBP18.2■□□□□ 0.5
CDX2-202ENST00000548877 ZEB1P37275 1124 aaPredicted RBP18.2■□□□□ 0.5
CDX2-202ENST00000548877 EAPPQ56P03 285 aaPredicted RBP18.2■□□□□ 0.5
CDX2-202ENST00000548877 CNTROBQ8N137 903 aa18.2■□□□□ 0.5
CDX2-202ENST00000548877 GPC2Q8N158 579 aa18.2■□□□□ 0.5
CDX2-202ENST00000548877 THSD7BQ9C0I4 1608 aa18.2■□□□□ 0.5
CDX2-202ENST00000548877 U2SURPO15042 1029 aaKnown RBP18.19■□□□□ 0.5
CDX2-202ENST00000548877 SLC34A2O95436 690 aa18.19■□□□□ 0.5
CDX2-202ENST00000548877 SNRPA1P09661 255 aaKnown RBP18.19■□□□□ 0.5
CDX2-202ENST00000548877 ALDH1B1P30837 517 aa18.19■□□□□ 0.5
CDX2-202ENST00000548877 IARSP41252 1262 aaKnown RBP18.19■□□□□ 0.5
CDX2-202ENST00000548877 MAP2K1Q02750 393 aaPredicted RBP18.19■□□□□ 0.5
CDX2-202ENST00000548877 CC2D1BQ5T0F9 858 aaKnown RBP18.19■□□□□ 0.5
CDX2-202ENST00000548877 PSMD1Q99460 953 aa18.19■□□□□ 0.5
CDX2-202ENST00000548877 PHACTR3Q96KR7 559 aa18.18■□□□□ 0.5
CDX2-202ENST00000548877 CLEC11AQ9Y240 323 aa18.18■□□□□ 0.5
CDX2-202ENST00000548877 WDR33Q9C0J8 1336 aaKnown RBP18.18■□□□□ 0.5
CDX2-202ENST00000548877 PRAMEF22A3QJZ6 481 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 NBPF26B4DH59 902 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 CRY2Q49AN0 593 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 MAP1SQ66K74 1059 aaPredicted RBP18.17■□□□□ 0.5
CDX2-202ENST00000548877 CC2D2BQ6DHV5 1058 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 NBPF10Q6P3W6 841 aaKnown RBP18.17■□□□□ 0.5
CDX2-202ENST00000548877 OLFM4Q6UX06 510 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 SYNE4Q8N205 404 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 NBPF15Q8N660 670 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 RSPH6AQ9H0K4 717 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 NIP7Q9Y221 180 aaKnown RBP eCLIP18.17■□□□□ 0.5
CDX2-202ENST00000548877 RNF123Q5XPI4 1314 aa18.17■□□□□ 0.5
CDX2-202ENST00000548877 PIP4K2AP48426 406 aaPredicted RBP18.16■□□□□ 0.5
CDX2-202ENST00000548877 ABHD8Q96I13 439 aa18.16■□□□□ 0.5
CDX2-202ENST00000548877 GRIPAP1Q4V328 841 aa18.15■□□□□ 0.5
CDX2-202ENST00000548877 DDX21Q9NR30 783 aaKnown RBP eCLIP18.15■□□□□ 0.5
CDX2-202ENST00000548877 LTBP1Q14766 1721 aa18.15■□□□□ 0.5
CDX2-202ENST00000548877 TRPM7Q96QT4 1865 aa18.14■□□□□ 0.49
CDX2-202ENST00000548877 PRKAR2BP31323 418 aa18.14■□□□□ 0.49
CDX2-202ENST00000548877 JDP2Q8WYK2 163 aa18.14■□□□□ 0.49
CDX2-202ENST00000548877 RIC1Q4ADV7 1423 aa18.14■□□□□ 0.49
CDX2-202ENST00000548877 COL4A5P29400 1685 aa18.13■□□□□ 0.49
CDX2-202ENST00000548877 HOXA10P31260 410 aaPredicted RBP18.13■□□□□ 0.49
CDX2-202ENST00000548877 HTATSF1O43719 755 aaKnown RBP18.12■□□□□ 0.49
CDX2-202ENST00000548877 RGS19P49795 217 aa18.12■□□□□ 0.49
CDX2-202ENST00000548877 HLFQ16534 295 aa18.12■□□□□ 0.49
CDX2-202ENST00000548877 NUP98P52948 1817 aa18.12■□□□□ 0.49
CDX2-202ENST00000548877 ECE1P42892 770 aa18.11■□□□□ 0.49
CDX2-202ENST00000548877 SCNN1DP51172 638 aa18.11■□□□□ 0.49
CDX2-202ENST00000548877 EIF6P56537 245 aaKnown RBP18.11■□□□□ 0.49
CDX2-202ENST00000548877 NYXQ9GZU5 481 aa18.11■□□□□ 0.49
CDX2-202ENST00000548877 ABT1Q9ULW3 272 aaKnown RBP18.11■□□□□ 0.49
CDX2-202ENST00000548877 LAMB4A4D0S4 1761 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms