RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 MAP3K11Q16584 847 aa27.55■■■□□ 2
NPAS3-206ENST00000548645 SOX12O15370 315 aa27.55■■■□□ 2
NPAS3-206ENST00000548645 TM6SF1Q9BZW5 370 aa27.55■■■□□ 2
NPAS3-206ENST00000548645 NALCNQ8IZF0 1738 aa27.55■■■□□ 2
NPAS3-206ENST00000548645 CYP46A1Q9Y6A2 500 aa27.54■■■□□ 2
NPAS3-206ENST00000548645 MAP3K5Q99683 1374 aa27.54■■■□□ 2
NPAS3-206ENST00000548645 JAKMIP1Q96N16 626 aaKnown RBP27.54■■■□□ 2
NPAS3-206ENST00000548645 NUP62CLQ9H1M0 184 aa27.54■■■□□ 2
NPAS3-206ENST00000548645 SPDYE4A6NLX3 237 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 PTGS1P23219 599 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 KRT85P78386 507 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 USP6P35125 1406 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 PLEKHG3A1L390 1219 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 FEZ1Q99689 392 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 ZSWIM6Q9HCJ5 1215 aa27.53■■■□□ 2
NPAS3-206ENST00000548645 RIMS1Q86UR5 1692 aaKnown RBP27.52■■■□□ 2
NPAS3-206ENST00000548645 SRGAP3O43295 1099 aa27.52■■■□□ 2
NPAS3-206ENST00000548645 HSP90AB4PQ58FF6 505 aa27.52■■■□□ 2
NPAS3-206ENST00000548645 GLRX3O76003 335 aaKnown RBP27.51■■■□□ 2
NPAS3-206ENST00000548645 TYRO3Q06418 890 aa27.51■■■□□ 2
NPAS3-206ENST00000548645 FLT4P35916 1363 aa27.51■■■□□ 2
NPAS3-206ENST00000548645 ELP1O95163 1332 aa27.51■■□□□ 1.99
NPAS3-206ENST00000548645 TTC41PQ6P2S7 1318 aa27.51■■□□□ 1.99
NPAS3-206ENST00000548645 U2AF2P26368 475 aaKnown RBP eCLIP27.51■■□□□ 1.99
NPAS3-206ENST00000548645 MRVI1Q9Y6F6 885 aa27.51■■□□□ 1.99
NPAS3-206ENST00000548645 GNAT3A8MTJ3 354 aa27.51■■□□□ 1.99
NPAS3-206ENST00000548645 SYCP1Q15431 976 aa27.51■■□□□ 1.99
NPAS3-206ENST00000548645 IGSF1Q8N6C5 1336 aa27.5■■□□□ 1.99
NPAS3-206ENST00000548645 USP42Q9H9J4 1324 aaKnown RBP27.5■■□□□ 1.99
NPAS3-206ENST00000548645 SBNO1A3KN83 1393 aa27.5■■□□□ 1.99
NPAS3-206ENST00000548645 TTC6Q86TZ1 520 aa27.5■■□□□ 1.99
NPAS3-206ENST00000548645 EYA1Q99502 592 aa27.5■■□□□ 1.99
NPAS3-206ENST00000548645 PRPF40BQ6NWY9 871 aaKnown RBP27.49■■□□□ 1.99
NPAS3-206ENST00000548645 ADCK5Q3MIX3 580 aa27.49■■□□□ 1.99
NPAS3-206ENST00000548645 LARP1BQ659C4 914 aaKnown RBP27.49■■□□□ 1.99
NPAS3-206ENST00000548645 KCNB2Q92953 911 aa27.49■■□□□ 1.99
NPAS3-206ENST00000548645 BABAM1Q9NWV8 329 aa27.49■■□□□ 1.99
NPAS3-206ENST00000548645 CCDC186Q7Z3E2 898 aa27.48■■□□□ 1.99
NPAS3-206ENST00000548645 LRRC37A3O60309 1634 aa27.48■■□□□ 1.99
NPAS3-206ENST00000548645 ME3Q16798 604 aa27.48■■□□□ 1.99
NPAS3-206ENST00000548645 LUZP1Q86V48 1076 aa27.48■■□□□ 1.99
NPAS3-206ENST00000548645 CCDC171Q6TFL3 1326 aa27.48■■□□□ 1.99
NPAS3-206ENST00000548645 PTH1RQ03431 593 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 DRC7Q8IY82 874 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 SMTNL1A8MU46 457 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 PDCP20941 246 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 HDGFP51858 240 aaKnown RBP27.47■■□□□ 1.99
NPAS3-206ENST00000548645 FMN2Q9NZ56 1722 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 ZKSCAN1P17029 563 aaPredicted RBP27.47■■□□□ 1.99
NPAS3-206ENST00000548645 HDGFL1Q5TGJ6 251 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 TNMDQ9H2S6 317 aa27.47■■□□□ 1.99
NPAS3-206ENST00000548645 LIG1P18858 919 aa27.46■■□□□ 1.99
NPAS3-206ENST00000548645 ST3GAL1Q11201 340 aa27.46■■□□□ 1.99
NPAS3-206ENST00000548645 CAMK4Q16566 473 aa27.46■■□□□ 1.99
NPAS3-206ENST00000548645 CRYBG1Q9Y4K1 1723 aa27.46■■□□□ 1.99
NPAS3-206ENST00000548645 NCBP1Q09161 790 aaKnown RBP27.46■■□□□ 1.99
NPAS3-206ENST00000548645 TAF7Q15545 349 aaPredicted RBP27.46■■□□□ 1.99
NPAS3-206ENST00000548645 ARHGAP30Q7Z6I6 1101 aaPredicted RBP27.46■■□□□ 1.99
NPAS3-206ENST00000548645 CHMP3Q9Y3E7 222 aa27.46■■□□□ 1.99
NPAS3-206ENST00000548645 CBX8Q9HC52 389 aa27.45■■□□□ 1.99
NPAS3-206ENST00000548645 OGFRQ9NZT2 677 aa27.45■■□□□ 1.99
NPAS3-206ENST00000548645 GOLGA6L4A6NEF3 574 aa27.45■■□□□ 1.98
NPAS3-206ENST00000548645 AMPHP49418 695 aa27.45■■□□□ 1.98
NPAS3-206ENST00000548645 PHAXQ9H814 394 aaKnown RBP27.45■■□□□ 1.98
NPAS3-206ENST00000548645 CEP170BQ9Y4F5 1589 aaPredicted RBP27.45■■□□□ 1.98
NPAS3-206ENST00000548645 NECAB1Q8N987 351 aa27.44■■□□□ 1.98
NPAS3-206ENST00000548645 SCAND2PQ9GZW5 306 aaPredicted RBP27.44■■□□□ 1.98
NPAS3-206ENST00000548645 DTNBO60941 627 aa27.44■■□□□ 1.98
NPAS3-206ENST00000548645 ANO6Q4KMQ2 910 aa27.44■■□□□ 1.98
NPAS3-206ENST00000548645 DDX19AQ9NUU7 478 aaKnown RBP27.44■■□□□ 1.98
NPAS3-206ENST00000548645 OS9Q13438 667 aaPredicted RBP27.44■■□□□ 1.98
NPAS3-206ENST00000548645 TRIM5Q9C035 493 aa27.44■■□□□ 1.98
NPAS3-206ENST00000548645 ROBO2Q9HCK4 1378 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 PAXBP1Q9Y5B6 917 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 TOPAZ1Q8N9V7 1692 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 TTC21AQ8NDW8 1320 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 ZNF75DP51815 510 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 NECTIN1Q15223 517 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 C16orf45Q96MC5 204 aaPredicted RBP27.43■■□□□ 1.98
NPAS3-206ENST00000548645 DACT1Q9NYF0 836 aa27.43■■□□□ 1.98
NPAS3-206ENST00000548645 NUTM2FA1L443 756 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 CKAP2LQ8IYA6 745 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 NBPF7P0C2Y1 421 aaPredicted RBP27.42■■□□□ 1.98
NPAS3-206ENST00000548645 TNNT1P13805 278 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 CDC37L1Q7L3B6 337 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 FERMT3Q86UX7 667 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 PLA2G4DQ86XP0 818 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 CLASRPQ8N2M8 674 aaKnown RBP27.42■■□□□ 1.98
NPAS3-206ENST00000548645 TPCN1Q9ULQ1 816 aa27.42■■□□□ 1.98
NPAS3-206ENST00000548645 LRMPQ12912 555 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 ZSCAN25Q6NSZ9 544 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 IL17REQ8NFR9 667 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 GPATCH3Q96I76 525 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 NPHP3Q7Z494 1330 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 TDRD7Q8NHU6 1098 aaKnown RBP27.41■■□□□ 1.98
NPAS3-206ENST00000548645 ECHDC1Q9NTX5 307 aa27.41■■□□□ 1.98
NPAS3-206ENST00000548645 PSMA5P28066 241 aa27.4■■□□□ 1.98
NPAS3-206ENST00000548645 RBM43Q6ZSC3 357 aaKnown RBP27.4■■□□□ 1.98
NPAS3-206ENST00000548645 SPATA32Q96LK8 384 aa27.4■■□□□ 1.98
NPAS3-206ENST00000548645 CGNQ9P2M7 1197 aaKnown RBP27.4■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms