RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 OLFM4Q6UX06 510 aa12.82□□□□□ -0.36
CHD4-212ENST00000545083 MASTLQ96GX5 879 aa12.82□□□□□ -0.36
CHD4-212ENST00000545083 HACL1Q9UJ83 578 aa12.82□□□□□ -0.36
CHD4-212ENST00000545083 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
CHD4-212ENST00000545083 SCN4AP35499 1836 aa12.82□□□□□ -0.36
CHD4-212ENST00000545083 CACNA1SQ13698 1873 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 A1BGP04217 495 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 EPHX2P34913 555 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 IL6STP40189 918 aaPredicted RBP12.81□□□□□ -0.36
CHD4-212ENST00000545083 SOGA3Q5TF21 947 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 SETDB2Q96T68 719 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 ZNF277Q9NRM2 450 aaPredicted RBP12.81□□□□□ -0.36
CHD4-212ENST00000545083 WDR33Q9C0J8 1336 aaKnown RBP12.81□□□□□ -0.36
CHD4-212ENST00000545083 HEG1Q9ULI3 1381 aa12.81□□□□□ -0.36
CHD4-212ENST00000545083 CCDC93Q567U6 631 aa12.8□□□□□ -0.36
CHD4-212ENST00000545083 CNTROBQ8N137 903 aa12.8□□□□□ -0.36
CHD4-212ENST00000545083 RNF123Q5XPI4 1314 aa12.8□□□□□ -0.36
CHD4-212ENST00000545083 ARFGEF2Q9Y6D5 1785 aa12.79□□□□□ -0.36
CHD4-212ENST00000545083 NPHP1O15259 732 aa12.79□□□□□ -0.36
CHD4-212ENST00000545083 ST5P78524 1137 aa12.79□□□□□ -0.36
CHD4-212ENST00000545083 MAP2K1Q02750 393 aaPredicted RBP12.79□□□□□ -0.36
CHD4-212ENST00000545083 FKBP4Q02790 459 aaKnown RBP eCLIP12.79□□□□□ -0.36
CHD4-212ENST00000545083 FMR1Q06787 632 aaKnown RBP eCLIP12.79□□□□□ -0.367e-7■■■■□ 22.6
CHD4-212ENST00000545083 ZNF790Q6PG37 636 aa12.79□□□□□ -0.36
CHD4-212ENST00000545083 CCDC85CA6NKD9 419 aa12.78□□□□□ -0.36
CHD4-212ENST00000545083 PIP4K2AP48426 406 aaPredicted RBP12.78□□□□□ -0.36
CHD4-212ENST00000545083 RGS19P49795 217 aa12.78□□□□□ -0.36
CHD4-212ENST00000545083 IL17REQ8NFR9 667 aa12.78□□□□□ -0.36
CHD4-212ENST00000545083 ABT1Q9ULW3 272 aaKnown RBP12.78□□□□□ -0.36
CHD4-212ENST00000545083 FZD9O00144 591 aa12.77□□□□□ -0.37
CHD4-212ENST00000545083 NPR1P16066 1061 aa12.77□□□□□ -0.37
CHD4-212ENST00000545083 MLLT1Q03111 559 aaPredicted RBP12.77□□□□□ -0.37
CHD4-212ENST00000545083 DZIP3Q86Y13 1208 aaKnown RBP12.77□□□□□ -0.37
CHD4-212ENST00000545083 TEX13AQ9BXU3 409 aaPredicted RBP12.77□□□□□ -0.37
CHD4-212ENST00000545083 KLRG2A4D1S0 409 aaPredicted RBP12.76□□□□□ -0.37
CHD4-212ENST00000545083 KCNQ3O43525 872 aa12.76□□□□□ -0.37
CHD4-212ENST00000545083 HSPA5P11021 654 aaKnown RBP12.76□□□□□ -0.37
CHD4-212ENST00000545083 AMER1Q5JTC6 1135 aaPredicted RBP12.76□□□□□ -0.37
CHD4-212ENST00000545083 PNMA8AQ86V59 439 aaPredicted RBP12.76□□□□□ -0.37
CHD4-212ENST00000545083 NBPF5PQ86XG9 351 aaPredicted RBP12.76□□□□□ -0.37
CHD4-212ENST00000545083 CAPNS2Q96L46 248 aa12.76□□□□□ -0.37
CHD4-212ENST00000545083 DDX21Q9NR30 783 aaKnown RBP eCLIP12.76□□□□□ -0.37
CHD4-212ENST00000545083 THSD7BQ9C0I4 1608 aa12.76□□□□□ -0.37
CHD4-212ENST00000545083 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
CHD4-212ENST00000545083 COL4A5P29400 1685 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 IARSP41252 1262 aaKnown RBP12.75□□□□□ -0.37
CHD4-212ENST00000545083 TEFQ10587 303 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 CYP4F22Q6NT55 531 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 SYNE4Q8N205 404 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 SNED1Q8TER0 1413 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 FMNL2Q96PY5 1086 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 TSKSQ9UJT2 592 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 KNSTRNQ9Y448 316 aa12.75□□□□□ -0.37
CHD4-212ENST00000545083 LTBP1Q14766 1721 aa12.74□□□□□ -0.37
CHD4-212ENST00000545083 PRAMEF22A3QJZ6 481 aa12.74□□□□□ -0.37
CHD4-212ENST00000545083 GRM1Q13255 1194 aa12.74□□□□□ -0.37
CHD4-212ENST00000545083 GPC2Q8N158 579 aa12.74□□□□□ -0.37
CHD4-212ENST00000545083 USP16Q9Y5T5 823 aa12.74□□□□□ -0.37
CHD4-212ENST00000545083 TRAF5O00463 557 aa12.73□□□□□ -0.37
CHD4-212ENST00000545083 DIAPH1O60610 1272 aaKnown RBP12.73□□□□□ -0.37
CHD4-212ENST00000545083 CST9Q5W186 159 aa12.73□□□□□ -0.37
CHD4-212ENST00000545083 PAXIP1Q6ZW49 1069 aaPredicted RBP12.73□□□□□ -0.37
CHD4-212ENST00000545083 NPM2Q86SE8 214 aaKnown RBP12.73□□□□□ -0.37
CHD4-212ENST00000545083 SLC51AQ86UW1 340 aa12.73□□□□□ -0.37
CHD4-212ENST00000545083 RTKN2Q8IZC4 609 aa12.73□□□□□ -0.37
CHD4-212ENST00000545083 GPR101Q96P66 508 aaPredicted RBP12.73□□□□□ -0.37
CHD4-212ENST00000545083 PCDH10Q9P2E7 1040 aa12.73□□□□□ -0.37
CHD4-212ENST00000545083 SIPA1L3O60292 1781 aaPredicted RBP12.73□□□□□ -0.37
CHD4-212ENST00000545083 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 GNAT3A8MTJ3 354 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 AOC2O75106 756 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 EPS15P42566 896 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 EIF4G2P78344 907 aaKnown RBP eCLIP12.72□□□□□ -0.37
CHD4-212ENST00000545083 CLEC4GQ6UXB4 293 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 GJA3Q9Y6H8 435 aa12.72□□□□□ -0.37
CHD4-212ENST00000545083 CEMIPQ8WUJ3 1361 aa12.71□□□□□ -0.37
CHD4-212ENST00000545083 ECE1P42892 770 aa12.71□□□□□ -0.37
CHD4-212ENST00000545083 SCNN1DP51172 638 aa12.71□□□□□ -0.37
CHD4-212ENST00000545083 PSMD1Q99460 953 aa12.71□□□□□ -0.37
CHD4-212ENST00000545083 TIMELESSQ9UNS1 1208 aa12.71□□□□□ -0.37
CHD4-212ENST00000545083 NIP7Q9Y221 180 aaKnown RBP eCLIP12.71□□□□□ -0.37
CHD4-212ENST00000545083 BTBD11A6QL63 1104 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 NBPF26B4DH59 902 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 NBPF10Q6P3W6 841 aaKnown RBP12.7□□□□□ -0.38
CHD4-212ENST00000545083 TPTE2Q6XPS3 522 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 NBPF15Q8N660 670 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 GAS2L2Q8NHY3 880 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 JDP2Q8WYK2 163 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 BEGAINQ9BUH8 593 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 MCOLN1Q9GZU1 580 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 TLL2Q9Y6L7 1015 aa12.7□□□□□ -0.38
CHD4-212ENST00000545083 COL3A1P02461 1466 aaPredicted RBP12.7□□□□□ -0.38
CHD4-212ENST00000545083 LMOD1P29536 600 aaPredicted RBP12.69□□□□□ -0.38
CHD4-212ENST00000545083 ALDH1B1P30837 517 aa12.69□□□□□ -0.38
CHD4-212ENST00000545083 EIF6P56537 245 aaKnown RBP12.69□□□□□ -0.38
CHD4-212ENST00000545083 HLFQ16534 295 aa12.69□□□□□ -0.38
CHD4-212ENST00000545083 ZNF652Q9Y2D9 606 aa12.69□□□□□ -0.38
CHD4-212ENST00000545083 TNRC18O15417 2968 aaPredicted RBP12.69□□□□□ -0.38
CHD4-212ENST00000545083 ABCC12Q96J65 1359 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms