RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 TEFQ10587 303 aa11.6□□□□□ -0.55
CLSTN3-212ENST00000541770 PRPF40BQ6NWY9 871 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-212ENST00000541770 CNBD1Q8NA66 436 aa11.6□□□□□ -0.55
CLSTN3-212ENST00000541770 SETDB2Q96T68 719 aa11.6□□□□□ -0.55
CLSTN3-212ENST00000541770 MYBBP1AQ9BQG0 1328 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-212ENST00000541770 BCORQ6W2J9 1755 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 SLC34A2O95436 690 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 CTCFP49711 727 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 LDHDQ86WU2 507 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 ZNF496Q96IT1 587 aaPredicted RBP11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 CFAP53Q96M91 514 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 PRDM10Q9NQV6 1147 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 LTBP3Q9NS15 1303 aa11.59□□□□□ -0.55
CLSTN3-212ENST00000541770 COL3A1P02461 1466 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 HEG1Q9ULI3 1381 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 TMEM88BA6NKF7 163 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 DIAPH1O60610 1272 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 A1BGP04217 495 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 VEGFBP49765 207 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 LBX1P52954 281 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 SOGA3Q5TF21 947 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 STYK1Q6J9G0 422 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 MASTLQ96GX5 879 aa11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 TEX13AQ9BXU3 409 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 TAF1DQ9H5J8 278 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 SIPA1L3O60292 1781 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-212ENST00000541770 SRGNP10124 158 aa11.57□□□□□ -0.56
CLSTN3-212ENST00000541770 IL6STP40189 918 aaPredicted RBP11.57□□□□□ -0.56
CLSTN3-212ENST00000541770 CCDC93Q567U6 631 aa11.57□□□□□ -0.56
CLSTN3-212ENST00000541770 ZNF790Q6PG37 636 aa11.57□□□□□ -0.56
CLSTN3-212ENST00000541770 PASKQ96RG2 1323 aa11.57□□□□□ -0.56
CLSTN3-212ENST00000541770 FAM177BA6PVY3 158 aa11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 U2SURPO15042 1029 aaKnown RBP11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 ANP32CO43423 234 aa11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 PIP4K2AP48426 406 aaPredicted RBP11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 NBPF5PQ86XG9 351 aaPredicted RBP11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 DZIP3Q86Y13 1208 aaKnown RBP11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 FMNL2Q96PY5 1086 aa11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 ZNF277Q9NRM2 450 aaPredicted RBP11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 ZNF541Q9H0D2 1346 aa11.56□□□□□ -0.56
CLSTN3-212ENST00000541770 GNAT3A8MTJ3 354 aa11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 CAMTA2O94983 1202 aa11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 DEFB115Q30KQ5 88 aa11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 PAXIP1Q6ZW49 1069 aaPredicted RBP11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 HACL1Q9UJ83 578 aa11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 ABT1Q9ULW3 272 aaKnown RBP11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 RNF123Q5XPI4 1314 aa11.55□□□□□ -0.56
CLSTN3-212ENST00000541770 ITGBL1O95965 494 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 EPHX2P34913 555 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 FKBP4Q02790 459 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 GRM1Q13255 1194 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 MAP1SQ66K74 1059 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 OLFM4Q6UX06 510 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 IL17REQ8NFR9 667 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 WBP1LQ9NX94 342 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 NUDCQ9Y266 331 aa11.54□□□□□ -0.56
CLSTN3-212ENST00000541770 BTBD11A6QL63 1104 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 KCNQ3O43525 872 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 NPR1P16066 1061 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 FAM161AQ3B820 660 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 CNTROBQ8N137 903 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 GAS2L2Q8NHY3 880 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 ADAMTSL1Q8N6G6 1762 aa11.53□□□□□ -0.56
CLSTN3-212ENST00000541770 HSPA8P11142 646 aaKnown RBP11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 GTF2E1P29083 439 aaPredicted RBP11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 ABHD8Q96I13 439 aa11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 ZNF652Q9Y2D9 606 aa11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 USP16Q9Y5T5 823 aa11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 GJA3Q9Y6H8 435 aa11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 WDR33Q9C0J8 1336 aaKnown RBP11.52□□□□□ -0.57
CLSTN3-212ENST00000541770 PRAMEF22A3QJZ6 481 aa11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 CCDC85CA6NKD9 419 aa11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 IARSP41252 1262 aaKnown RBP11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 MAP2K1Q02750 393 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 TPTE2Q6XPS3 522 aa11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 PNMA8AQ86V59 439 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 RTKN2Q8IZC4 609 aa11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 SYNE4Q8N205 404 aa11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 NIP7Q9Y221 180 aaKnown RBP eCLIP11.51□□□□□ -0.57
CLSTN3-212ENST00000541770 RASSF10A6NK89 507 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 LMOD1P29536 600 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 C7orf43Q8WVR3 580 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 JDP2Q8WYK2 163 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 CFAP44Q96MT7 982 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 BEGAINQ9BUH8 593 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 TRPM7Q96QT4 1865 aa11.5□□□□□ -0.57
CLSTN3-212ENST00000541770 U2AF1L5P0DN76 240 aaPredicted RBP11.49□□□□□ -0.57
CLSTN3-212ENST00000541770 ALDH1B1P30837 517 aa11.49□□□□□ -0.57
CLSTN3-212ENST00000541770 EIF6P56537 245 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-212ENST00000541770 U2AF1Q01081 240 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLSTN3-212ENST00000541770 CLEC4GQ6UXB4 293 aa11.49□□□□□ -0.57
CLSTN3-212ENST00000541770 FZD9O00144 591 aa11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 FMR1Q06787 632 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 DIEXFQ68CQ4 756 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 CYP4F22Q6NT55 531 aa11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 GPC2Q8N158 579 aa11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 RSPH6AQ9H0K4 717 aa11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 DDX21Q9NR30 783 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLSTN3-212ENST00000541770 TSKSQ9UJT2 592 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms