RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 AKAP4Q5JQC9 854 aa13.17□□□□□ -0.3
YBX3-211ENST00000541351 USP50Q70EL3 339 aaPredicted RBP13.17□□□□□ -0.3
YBX3-211ENST00000541351 NPM2Q86SE8 214 aaKnown RBP13.17□□□□□ -0.3
YBX3-211ENST00000541351 CARMIL3Q8ND23 1372 aa13.17□□□□□ -0.3
YBX3-211ENST00000541351 ZNF541Q9H0D2 1346 aa13.16□□□□□ -0.3
YBX3-211ENST00000541351 CIAPIN1Q6FI81 312 aa13.16□□□□□ -0.3
YBX3-211ENST00000541351 SAPCD2Q86UD0 394 aa13.16□□□□□ -0.3
YBX3-211ENST00000541351 FZD9O00144 591 aa13.15□□□□□ -0.3
YBX3-211ENST00000541351 PKN2Q16513 984 aaKnown RBP13.15□□□□□ -0.3
YBX3-211ENST00000541351 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.3
YBX3-211ENST00000541351 CNBD1Q8NA66 436 aa13.15□□□□□ -0.3
YBX3-211ENST00000541351 EMILIN1Q9Y6C2 1016 aa13.15□□□□□ -0.3
YBX3-211ENST00000541351 CST9Q5W186 159 aa13.14□□□□□ -0.31
YBX3-211ENST00000541351 CTU1Q7Z7A3 348 aaKnown RBP13.14□□□□□ -0.31
YBX3-211ENST00000541351 NFATC2IPQ8NCF5 419 aa13.14□□□□□ -0.31
YBX3-211ENST00000541351 CELF2O95319 508 aaKnown RBP13.13□□□□□ -0.31
YBX3-211ENST00000541351 SRGNP10124 158 aa13.13□□□□□ -0.31
YBX3-211ENST00000541351 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
YBX3-211ENST00000541351 PRR5LQ6MZQ0 368 aa13.13□□□□□ -0.31
YBX3-211ENST00000541351 DNAJC10Q8IXB1 793 aa13.13□□□□□ -0.31
YBX3-211ENST00000541351 ZNF277Q9NRM2 450 aaPredicted RBP13.13□□□□□ -0.31
YBX3-211ENST00000541351 ADAMTS7Q9UKP4 1686 aa13.12□□□□□ -0.31
YBX3-211ENST00000541351 CYP19A1P11511 503 aaPredicted RBP13.12□□□□□ -0.31
YBX3-211ENST00000541351 SETDB2Q96T68 719 aa13.12□□□□□ -0.31
YBX3-211ENST00000541351 ANKRD26Q9UPS8 1709 aa13.12□□□□□ -0.31
YBX3-211ENST00000541351 TRPM7Q96QT4 1865 aa13.12□□□□□ -0.31
YBX3-211ENST00000541351 STARD3NLO95772 234 aa13.11□□□□□ -0.31
YBX3-211ENST00000541351 BCL2L12Q9HB09 334 aa13.11□□□□□ -0.31
YBX3-211ENST00000541351 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
YBX3-211ENST00000541351 TJP1Q07157 1748 aa13.1□□□□□ -0.31
YBX3-211ENST00000541351 NPR1P16066 1061 aa13.1□□□□□ -0.31
YBX3-211ENST00000541351 GRIPAP1Q4V328 841 aa13.1□□□□□ -0.31
YBX3-211ENST00000541351 VSIG10Q8N0Z9 540 aa13.1□□□□□ -0.31
YBX3-211ENST00000541351 ZBTB1Q9Y2K1 713 aa13.1□□□□□ -0.31
YBX3-211ENST00000541351 TRAF5O00463 557 aa13.09□□□□□ -0.31
YBX3-211ENST00000541351 DLL1O00548 723 aa13.09□□□□□ -0.31
YBX3-211ENST00000541351 ALDH1B1P30837 517 aa13.09□□□□□ -0.31
YBX3-211ENST00000541351 CDCA8Q53HL2 280 aa13.09□□□□□ -0.31
YBX3-211ENST00000541351 REM2Q8IYK8 340 aaPredicted RBP13.09□□□□□ -0.31
YBX3-211ENST00000541351 ADARB2Q9NS39 739 aaKnown RBP13.09□□□□□ -0.31
YBX3-211ENST00000541351 TBC1D9BQ66K14 1250 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 CC2D2BQ6DHV5 1058 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 C7orf43Q8WVR3 580 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 CCDC102AQ96A19 550 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 PSMD1Q99460 953 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 HPS5Q9UPZ3 1129 aa13.08□□□□□ -0.32
YBX3-211ENST00000541351 ARFGEF2Q9Y6D5 1785 aa13.07□□□□□ -0.32
YBX3-211ENST00000541351 SLX4Q8IY92 1834 aa13.07□□□□□ -0.32
YBX3-211ENST00000541351 KIF20BQ96Q89 1820 aa13.07□□□□□ -0.32
YBX3-211ENST00000541351 CANXP27824 592 aaKnown RBP13.07□□□□□ -0.32
YBX3-211ENST00000541351 SYNE4Q8N205 404 aa13.07□□□□□ -0.32
YBX3-211ENST00000541351 ANKRD31Q8N7Z5 1873 aa13.06□□□□□ -0.32
YBX3-211ENST00000541351 EPS15P42566 896 aa13.06□□□□□ -0.32
YBX3-211ENST00000541351 HUNKP57058 714 aa13.06□□□□□ -0.32
YBX3-211ENST00000541351 FMR1Q06787 632 aaKnown RBP eCLIP13.06□□□□□ -0.32
YBX3-211ENST00000541351 ZC3H15Q8WU90 426 aaKnown RBP13.06□□□□□ -0.32
YBX3-211ENST00000541351 TEX13AQ9BXU3 409 aaPredicted RBP13.06□□□□□ -0.32
YBX3-211ENST00000541351 ZNF408Q9H9D4 720 aa13.06□□□□□ -0.32
YBX3-211ENST00000541351 HDAC9Q9UKV0 1011 aa13.06□□□□□ -0.32
YBX3-211ENST00000541351 COL11A2P13942 1736 aaPredicted RBP13.05□□□□□ -0.32
YBX3-211ENST00000541351 FXR1P51114 621 aaKnown RBP eCLIP13.05□□□□□ -0.32
YBX3-211ENST00000541351 SCNN1DP51172 638 aa13.05□□□□□ -0.32
YBX3-211ENST00000541351 EIF5P55010 431 aaKnown RBP13.05□□□□□ -0.32
YBX3-211ENST00000541351 EIF4A2Q14240 407 aaKnown RBP13.05□□□□□ -0.32
YBX3-211ENST00000541351 CDC37L1Q7L3B6 337 aa13.05□□□□□ -0.32
YBX3-211ENST00000541351 SLC52A2Q9HAB3 445 aa13.05□□□□□ -0.32
YBX3-211ENST00000541351 TRPA1O75762 1119 aa13.04□□□□□ -0.32
YBX3-211ENST00000541351 RGMBQ6NW40 437 aa13.04□□□□□ -0.32
YBX3-211ENST00000541351 NBPF5PQ86XG9 351 aaPredicted RBP13.04□□□□□ -0.32
YBX3-211ENST00000541351 CCDC24Q8N4L8 307 aa13.04□□□□□ -0.32
YBX3-211ENST00000541351 TTC5Q8N0Z6 440 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 LARGE2Q8N3Y3 721 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 SLC17A8Q8NDX2 589 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 TESK2Q96S53 571 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 TMX4Q9H1E5 349 aaPredicted RBP13.03□□□□□ -0.32
YBX3-211ENST00000541351 RNF186Q9NXI6 227 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 ZNF652Q9Y2D9 606 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 ZNF330Q9Y3S2 320 aaPredicted RBP13.03□□□□□ -0.32
YBX3-211ENST00000541351 CDHR2Q9BYE9 1310 aa13.03□□□□□ -0.32
YBX3-211ENST00000541351 IL6STP40189 918 aaPredicted RBP13.02□□□□□ -0.33
YBX3-211ENST00000541351 NEUROD1Q13562 356 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 TPTE2Q6XPS3 522 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 NIM1KQ8IY84 436 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 C2orf69Q8N8R5 385 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 POLKQ9UBT6 870 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 CACNA1SQ13698 1873 aa13.02□□□□□ -0.33
YBX3-211ENST00000541351 GLIS2Q9BZE0 524 aaPredicted RBP13.01□□□□□ -0.33
YBX3-211ENST00000541351 GPRC5DQ9NZD1 345 aa13.01□□□□□ -0.33
YBX3-211ENST00000541351 KLRG2A4D1S0 409 aaPredicted RBP13□□□□□ -0.33
YBX3-211ENST00000541351 KIF23Q02241 960 aaPredicted RBP13□□□□□ -0.33
YBX3-211ENST00000541351 INTS3Q68E01 1043 aaKnown RBP13□□□□□ -0.33
YBX3-211ENST00000541351 FBXO46Q6PJ61 603 aaPredicted RBP13□□□□□ -0.33
YBX3-211ENST00000541351 CLEC4GQ6UXB4 293 aa13□□□□□ -0.33
YBX3-211ENST00000541351 PGAP2Q9UHJ9 254 aa13□□□□□ -0.33
YBX3-211ENST00000541351 TBC1D2BQ9UPU7 963 aa13□□□□□ -0.33
YBX3-211ENST00000541351 BCORQ6W2J9 1755 aa12.99□□□□□ -0.33
YBX3-211ENST00000541351 ZNF157P51786 506 aaPredicted RBP12.99□□□□□ -0.33
YBX3-211ENST00000541351 VPS33BQ9H267 617 aa12.99□□□□□ -0.33
YBX3-211ENST00000541351 SCN7AQ01118 1682 aa12.99□□□□□ -0.33
YBX3-211ENST00000541351 GTF2E1P29083 439 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms