RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 MASTLQ96GX5 879 aa35.99■■■■□ 3.35
CHFR-218ENST00000540963 BTBD11A6QL63 1104 aa35.98■■■■□ 3.35
CHFR-218ENST00000540963 HSPA1AP0DMV8 641 aaKnown RBP35.98■■■■□ 3.35
CHFR-218ENST00000540963 HSPA1BP0DMV9 641 aaKnown RBP35.98■■■■□ 3.35
CHFR-218ENST00000540963 DZIP3Q86Y13 1208 aaKnown RBP35.98■■■■□ 3.35
CHFR-218ENST00000540963 CCDC24Q8N4L8 307 aa35.98■■■■□ 3.35
CHFR-218ENST00000540963 ZNF219Q9P2Y4 722 aaPredicted RBP35.98■■■■□ 3.35
CHFR-218ENST00000540963 PRPF40BQ6NWY9 871 aaKnown RBP35.97■■■■□ 3.35
CHFR-218ENST00000540963 CHADLQ6NUI6 762 aa35.96■■■■□ 3.35
CHFR-218ENST00000540963 RGL2O15211 777 aa35.95■■■■□ 3.35
CHFR-218ENST00000540963 CREBZFQ9NS37 354 aa35.95■■■■□ 3.35
CHFR-218ENST00000540963 SCN4AP35499 1836 aa35.93■■■■□ 3.34
CHFR-218ENST00000540963 PHACTR3Q96KR7 559 aa35.92■■■■□ 3.34
CHFR-218ENST00000540963 RSPH6AQ9H0K4 717 aa35.92■■■■□ 3.34
CHFR-218ENST00000540963 ZNF652Q9Y2D9 606 aa35.92■■■■□ 3.34
CHFR-218ENST00000540963 IQCA1LA6NCM1 817 aa35.91■■■■□ 3.34
CHFR-218ENST00000540963 KCNQ3O43525 872 aa35.91■■■■□ 3.34
CHFR-218ENST00000540963 DDNO94850 711 aaPredicted RBP35.91■■■■□ 3.34
CHFR-218ENST00000540963 PRKAR2BP31323 418 aa35.91■■■■□ 3.34
CHFR-218ENST00000540963 CFAP53Q96M91 514 aa35.91■■■■□ 3.34
CHFR-218ENST00000540963 USP16Q9Y5T5 823 aa35.91■■■■□ 3.34
CHFR-218ENST00000540963 C7orf43Q8WVR3 580 aa35.9■■■■□ 3.34
CHFR-218ENST00000540963 NBPF5PQ86XG9 351 aaPredicted RBP35.89■■■■□ 3.34
CHFR-218ENST00000540963 L3MBTL3Q96JM7 780 aaPredicted RBP35.89■■■■□ 3.34
CHFR-218ENST00000540963 KLRG2A4D1S0 409 aaPredicted RBP35.88■■■■□ 3.33
CHFR-218ENST00000540963 SNRPA1P09661 255 aaKnown RBP35.88■■■■□ 3.33
CHFR-218ENST00000540963 NPR1P16066 1061 aa35.87■■■■□ 3.33
CHFR-218ENST00000540963 CCDC93Q567U6 631 aa35.87■■■■□ 3.33
CHFR-218ENST00000540963 NUDCQ9Y266 331 aa35.87■■■■□ 3.33
CHFR-218ENST00000540963 RTF1Q92541 710 aaKnown RBP35.85■■■■□ 3.33
CHFR-218ENST00000540963 TPTE2Q6XPS3 522 aa35.84■■■■□ 3.33
CHFR-218ENST00000540963 LDHDQ86WU2 507 aa35.84■■■■□ 3.33
CHFR-218ENST00000540963 CAPN15O75808 1086 aa35.83■■■■□ 3.33
CHFR-218ENST00000540963 POTEIP0CG38 1075 aa35.82■■■■□ 3.32
CHFR-218ENST00000540963 POTEJP0CG39 1038 aa35.82■■■■□ 3.32
CHFR-218ENST00000540963 HTATSF1O43719 755 aaKnown RBP35.81■■■■□ 3.32
CHFR-218ENST00000540963 FKBP4Q02790 459 aaKnown RBP eCLIP35.81■■■■□ 3.32
CHFR-218ENST00000540963 PASKQ96RG2 1323 aa35.81■■■■□ 3.32
CHFR-218ENST00000540963 PIP4K2AP48426 406 aaPredicted RBP35.8■■■■□ 3.32
CHFR-218ENST00000540963 CNGB1Q14028 1251 aaPredicted RBP35.8■■■■□ 3.32
CHFR-218ENST00000540963 TAF1DQ9H5J8 278 aaPredicted RBP35.8■■■■□ 3.32
CHFR-218ENST00000540963 PRAMEF22A3QJZ6 481 aa35.79■■■■□ 3.32
CHFR-218ENST00000540963 RTKN2Q8IZC4 609 aa35.79■■■■□ 3.32
CHFR-218ENST00000540963 MKRN1Q9UHC7 482 aaKnown RBP35.79■■■■□ 3.32
CHFR-218ENST00000540963 CNTNAP1P78357 1384 aa35.78■■■■□ 3.32
CHFR-218ENST00000540963 NIP7Q9Y221 180 aaKnown RBP eCLIP35.78■■■■□ 3.32
CHFR-218ENST00000540963 NBPF26B4DH59 902 aa35.76■■■■□ 3.32
CHFR-218ENST00000540963 NBPF10Q6P3W6 841 aaKnown RBP35.76■■■■□ 3.32
CHFR-218ENST00000540963 MCM10Q7L590 875 aa35.76■■■■□ 3.32
CHFR-218ENST00000540963 NBPF15Q8N660 670 aa35.76■■■■□ 3.32
CHFR-218ENST00000540963 U2AF1L5P0DN76 240 aaPredicted RBP35.75■■■■□ 3.31
CHFR-218ENST00000540963 ALDH1B1P30837 517 aa35.75■■■■□ 3.31
CHFR-218ENST00000540963 U2AF1Q01081 240 aaKnown RBP eCLIP35.75■■■■□ 3.31
CHFR-218ENST00000540963 LAMB4A4D0S4 1761 aa35.73■■■■□ 3.31
CHFR-218ENST00000540963 ADAMTSL1Q8N6G6 1762 aa35.72■■■■□ 3.31
CHFR-218ENST00000540963 ZNF277Q9NRM2 450 aaPredicted RBP35.72■■■■□ 3.31
CHFR-218ENST00000540963 HACL1Q9UJ83 578 aa35.72■■■■□ 3.31
CHFR-218ENST00000540963 ITGBL1O95965 494 aaPredicted RBP35.71■■■■□ 3.31
CHFR-218ENST00000540963 TMEM88BA6NKF7 163 aa35.7■■■■□ 3.31
CHFR-218ENST00000540963 TAF7Q15545 349 aaPredicted RBP35.7■■■■□ 3.31
CHFR-218ENST00000540963 PNMA8AQ86V59 439 aaPredicted RBP35.7■■■■□ 3.31
CHFR-218ENST00000540963 ZNF541Q9H0D2 1346 aa35.7■■■■□ 3.31
CHFR-218ENST00000540963 FZD9O00144 591 aa35.69■■■■□ 3.3
CHFR-218ENST00000540963 PPP2R1AP30153 589 aa35.68■■■■□ 3.3
CHFR-218ENST00000540963 PRDM10Q9NQV6 1147 aa35.68■■■■□ 3.3
CHFR-218ENST00000540963 IARSP41252 1262 aaKnown RBP35.67■■■■□ 3.3
CHFR-218ENST00000540963 PSMD1Q99460 953 aa35.67■■■■□ 3.3
CHFR-218ENST00000540963 NYXQ9GZU5 481 aa35.67■■■■□ 3.3
CHFR-218ENST00000540963 GTF2E1P29083 439 aaPredicted RBP35.66■■■■□ 3.3
CHFR-218ENST00000540963 EPHX2P34913 555 aa35.66■■■■□ 3.3
CHFR-218ENST00000540963 DCTN1Q14203 1278 aa35.66■■■■□ 3.3
CHFR-218ENST00000540963 HLFQ16534 295 aa35.66■■■■□ 3.3
CHFR-218ENST00000540963 CRY2Q49AN0 593 aa35.66■■■■□ 3.3
CHFR-218ENST00000540963 CC2D2BQ6DHV5 1058 aa35.66■■■■□ 3.3
CHFR-218ENST00000540963 NUP98P52948 1817 aa35.65■■■■□ 3.3
CHFR-218ENST00000540963 ERVV-1B6SEH8 477 aa35.65■■■■□ 3.3
CHFR-218ENST00000540963 EAPPQ56P03 285 aaPredicted RBP35.65■■■■□ 3.3
CHFR-218ENST00000540963 GPC2Q8N158 579 aa35.65■■■■□ 3.3
CHFR-218ENST00000540963 SYNE4Q8N205 404 aa35.65■■■■□ 3.3
CHFR-218ENST00000540963 SNED1Q8TER0 1413 aa35.65■■■■□ 3.3
CHFR-218ENST00000540963 FOXN1O15353 648 aa35.64■■■■□ 3.3
CHFR-218ENST00000540963 OLFM4Q6UX06 510 aa35.64■■■■□ 3.3
CHFR-218ENST00000540963 GRIPAP1Q4V328 841 aa35.63■■■■□ 3.29
CHFR-218ENST00000540963 PNISRQ8TF01 805 aaKnown RBP35.63■■■■□ 3.29
CHFR-218ENST00000540963 FAM177BA6PVY3 158 aa35.62■■■■□ 3.29
CHFR-218ENST00000540963 CLEC11AQ9Y240 323 aa35.62■■■■□ 3.29
CHFR-218ENST00000540963 RIC1Q4ADV7 1423 aa35.62■■■■□ 3.29
CHFR-218ENST00000540963 VEGFBP49765 207 aa35.61■■■■□ 3.29
CHFR-218ENST00000540963 JDP2Q8WYK2 163 aa35.61■■■■□ 3.29
CHFR-218ENST00000540963 AIDAQ96BJ3 306 aa35.61■■■■□ 3.29
CHFR-218ENST00000540963 IBTKQ9P2D0 1353 aaPredicted RBP35.61■■■■□ 3.29
CHFR-218ENST00000540963 KDM3BQ7LBC6 1761 aa35.61■■■■□ 3.29
CHFR-218ENST00000540963 CTCFP49711 727 aaPredicted RBP35.6■■■■□ 3.29
CHFR-218ENST00000540963 RNF123Q5XPI4 1314 aa35.59■■■■□ 3.29
CHFR-218ENST00000540963 DLG5Q8TDM6 1919 aa35.59■■■■□ 3.29
CHFR-218ENST00000540963 MAP3K15Q6ZN16 1313 aa35.58■■■■□ 3.29
CHFR-218ENST00000540963 CNTROBQ8N137 903 aa35.58■■■■□ 3.29
CHFR-218ENST00000540963 RASSF10A6NK89 507 aa35.57■■■■□ 3.28
CHFR-218ENST00000540963 NEFMP07197 916 aa35.57■■■■□ 3.28
CHFR-218ENST00000540963 HOXA10P31260 410 aaPredicted RBP35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 521.8 ms