RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 SCN7AQ01118 1682 aa15.75■□□□□ 0.11
SMAD3-204ENST00000540846 ANKRD36CQ5JPF3 1778 aa15.75■□□□□ 0.11
SMAD3-204ENST00000540846 RWDD1Q9H446 243 aaPredicted RBP15.75■□□□□ 0.11
SMAD3-204ENST00000540846 HDAC1Q13547 482 aaPredicted RBP15.74■□□□□ 0.11
SMAD3-204ENST00000540846 RC3H1Q5TC82 1133 aaKnown RBP15.74■□□□□ 0.11
SMAD3-204ENST00000540846 XAGE3Q8WTP9 111 aa15.74■□□□□ 0.11
SMAD3-204ENST00000540846 CAMKK2Q96RR4 588 aa15.74■□□□□ 0.11
SMAD3-204ENST00000540846 NUP98P52948 1817 aa15.73■□□□□ 0.11
SMAD3-204ENST00000540846 IL6STP40189 918 aaPredicted RBP15.73■□□□□ 0.11
SMAD3-204ENST00000540846 EIF5P55010 431 aaKnown RBP15.73■□□□□ 0.11
SMAD3-204ENST00000540846 COPS6Q7L5N1 327 aa15.73■□□□□ 0.11
SMAD3-204ENST00000540846 AMIGO3Q86WK7 504 aa15.73■□□□□ 0.11
SMAD3-204ENST00000540846 FKBP5Q13451 457 aaPredicted RBP15.72■□□□□ 0.11
SMAD3-204ENST00000540846 TTLL7Q6ZT98 887 aa15.72■□□□□ 0.11
SMAD3-204ENST00000540846 SKAP1Q86WV1 359 aa15.72■□□□□ 0.11
SMAD3-204ENST00000540846 QSER1Q2KHR3 1735 aa15.72■□□□□ 0.11
SMAD3-204ENST00000540846 F6X3S4 739 aa15.71■□□□□ 0.11
SMAD3-204ENST00000540846 ZBTB7BO15156 539 aaPredicted RBP15.71■□□□□ 0.11
SMAD3-204ENST00000540846 INTS3Q68E01 1043 aaKnown RBP15.71■□□□□ 0.11
SMAD3-204ENST00000540846 AFDNP55196 1824 aaKnown RBP15.71■□□□□ 0.11
SMAD3-204ENST00000540846 PI4KAP2A4QPH2 592 aa15.7■□□□□ 0.1
SMAD3-204ENST00000540846 PI4KAP1Q8N8J0 262 aa15.7■□□□□ 0.1
SMAD3-204ENST00000540846 COL15A1P39059 1388 aa15.7■□□□□ 0.1
SMAD3-204ENST00000540846 ATP10DQ9P241 1426 aa15.7■□□□□ 0.1
SMAD3-204ENST00000540846 EN1Q05925 392 aaPredicted RBP15.7■□□□□ 0.1
SMAD3-204ENST00000540846 AIMP1Q12904 312 aaKnown RBP15.7■□□□□ 0.1
SMAD3-204ENST00000540846 KSR2Q6VAB6 950 aa15.7■□□□□ 0.1
SMAD3-204ENST00000540846 RPS6KA4O75676 772 aa15.69■□□□□ 0.1
SMAD3-204ENST00000540846 EZH2Q15910 746 aaKnown RBP15.69■□□□□ 0.1
SMAD3-204ENST00000540846 DEFB132Q7Z7B7 95 aa15.69■□□□□ 0.1
SMAD3-204ENST00000540846 ANKRD13DQ6ZTN6 518 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 SMIM5Q71RC9 77 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 CCDC125Q86Z20 511 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 PLBD2Q8NHP8 589 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 DNAAF4Q8WXU2 420 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 AKT1S1Q96B36 256 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 MAP3K2Q9Y2U5 619 aa15.68■□□□□ 0.1
SMAD3-204ENST00000540846 GNPATO15228 680 aa15.67■□□□□ 0.1
SMAD3-204ENST00000540846 ZNF827Q17R98 1081 aa15.67■□□□□ 0.1
SMAD3-204ENST00000540846 IBTKQ9P2D0 1353 aaPredicted RBP15.67■□□□□ 0.1
SMAD3-204ENST00000540846 MAP3K15Q6ZN16 1313 aa15.67■□□□□ 0.1
SMAD3-204ENST00000540846 DDX58O95786 925 aaKnown RBP15.66■□□□□ 0.1
SMAD3-204ENST00000540846 PDE4AP27815 886 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 BAG6P46379 1132 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 BEND3Q5T5X7 828 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 ILDR2Q71H61 639 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 SMC5Q8IY18 1101 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 BACH2Q9BYV9 841 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 DZIP3Q86Y13 1208 aaKnown RBP15.66■□□□□ 0.1
SMAD3-204ENST00000540846 UPF1Q92900 1129 aaKnown RBP eCLIP15.66■□□□□ 0.1
SMAD3-204ENST00000540846 ZBTB3Q9H5J0 574 aa15.66■□□□□ 0.1
SMAD3-204ENST00000540846 ZNF330Q9Y3S2 320 aaPredicted RBP15.66■□□□□ 0.1
SMAD3-204ENST00000540846 COL24A1Q17RW2 1714 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 CAMTA2O94983 1202 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 IGKV5-2P06315 115 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 RGS3P49796 1198 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 SF3B2Q13435 895 aaKnown RBP15.65■□□□□ 0.1
SMAD3-204ENST00000540846 AK7Q96M32 723 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 METTL22Q9BUU2 404 aaPredicted RBP15.65■□□□□ 0.1
SMAD3-204ENST00000540846 ANO8Q9HCE9 1232 aaPredicted RBP15.65■□□□□ 0.1
SMAD3-204ENST00000540846 PDZRN3Q9UPQ7 1066 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 TBC1D2BQ9UPU7 963 aa15.65■□□□□ 0.1
SMAD3-204ENST00000540846 ERVV-1B6SEH8 477 aa15.64■□□□□ 0.09
SMAD3-204ENST00000540846 SLC4A10Q6U841 1118 aa15.64■□□□□ 0.09
SMAD3-204ENST00000540846 RIC3Q7Z5B4 369 aa15.64■□□□□ 0.09
SMAD3-204ENST00000540846 RTCBQ9Y3I0 505 aaKnown RBP15.64■□□□□ 0.09
SMAD3-204ENST00000540846 CCT4P50991 539 aaKnown RBP15.63■□□□□ 0.09
SMAD3-204ENST00000540846 HLFQ16534 295 aa15.63■□□□□ 0.09
SMAD3-204ENST00000540846 GIGYF2Q6Y7W6 1299 aaKnown RBP15.63■□□□□ 0.09
SMAD3-204ENST00000540846 KIF6Q6ZMV9 814 aa15.63■□□□□ 0.09
SMAD3-204ENST00000540846 ADRA2BP18089 450 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 HMGB2P26583 209 aaKnown RBP15.62■□□□□ 0.09
SMAD3-204ENST00000540846 SSFA2P28290 1259 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 CWF19L2Q2TBE0 894 aaKnown RBP15.62■□□□□ 0.09
SMAD3-204ENST00000540846 LINS1Q8NG48 757 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 ARHGEF1Q92888 912 aaKnown RBP15.62■□□□□ 0.09
SMAD3-204ENST00000540846 BCL2L12Q9HB09 334 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 USP42Q9H9J4 1324 aaKnown RBP15.62■□□□□ 0.09
SMAD3-204ENST00000540846 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.62■□□□□ 0.09
SMAD3-204ENST00000540846 RGL2O15211 777 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 ISCA1Q9BUE6 129 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 SRCIN1Q9C0H9 1055 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 C1orf115Q9H7X2 142 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 NARFQ9UHQ1 456 aa15.62■□□□□ 0.09
SMAD3-204ENST00000540846 A0A087WZG4 1122 aa15.61■□□□□ 0.09
SMAD3-204ENST00000540846 NEURL1BA8MQ27 555 aa15.61■□□□□ 0.09
SMAD3-204ENST00000540846 ALDH1L1O75891 902 aa15.61■□□□□ 0.09
SMAD3-204ENST00000540846 FAM161AQ3B820 660 aa15.61■□□□□ 0.09
SMAD3-204ENST00000540846 MYD88Q99836 296 aa15.61■□□□□ 0.09
SMAD3-204ENST00000540846 PHF14O94880 888 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 TCIRG1Q13488 830 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 C8orf34Q49A92 452 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 SIRT2Q8IXJ6 389 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 MEIS3Q99687 375 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 USP44Q9H0E7 712 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 SRP68Q9UHB9 627 aaKnown RBP15.6■□□□□ 0.09
SMAD3-204ENST00000540846 PNPLA7Q6ZV29 1317 aa15.6■□□□□ 0.09
SMAD3-204ENST00000540846 TRIM28Q13263 835 aaKnown RBP15.59■□□□□ 0.09
SMAD3-204ENST00000540846 ZNF34Q8IZ26 560 aa15.59■□□□□ 0.09
SMAD3-204ENST00000540846 GCC1Q96CN9 775 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms