RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TMEM132EQ6IEE7 984 aa11.22□□□□□ -0.61
CLIP1-214ENST00000540539 ZGPATQ8N5A5 531 aaKnown RBP11.22□□□□□ -0.61
CLIP1-214ENST00000540539 H0YHG0 523 aa11.21□□□□□ -0.61
CLIP1-214ENST00000540539 SARNPP82979 210 aaKnown RBP11.21□□□□□ -0.61
CLIP1-214ENST00000540539 LRMPQ12912 555 aa11.21□□□□□ -0.61
CLIP1-214ENST00000540539 CEP135Q66GS9 1140 aa11.21□□□□□ -0.61
CLIP1-214ENST00000540539 TTC19Q6DKK2 380 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-214ENST00000540539 CWC22Q9HCG8 908 aaKnown RBP11.21□□□□□ -0.61
CLIP1-214ENST00000540539 DMRT2Q9Y5R5 561 aa11.21□□□□□ -0.61
CLIP1-214ENST00000540539 MRVI1Q9Y6F6 885 aa11.21□□□□□ -0.61
CLIP1-214ENST00000540539 SETD1AO15047 1707 aaKnown RBP11.21□□□□□ -0.62
CLIP1-214ENST00000540539 NPHP1O15259 732 aa11.21□□□□□ -0.62
CLIP1-214ENST00000540539 IFNLR1Q8IU57 520 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-214ENST00000540539 REXO1L1PQ8IX06 675 aa11.21□□□□□ -0.62
CLIP1-214ENST00000540539 ZCCHC17Q9NP64 241 aaKnown RBP11.21□□□□□ -0.62
CLIP1-214ENST00000540539 ADGRB1O14514 1584 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 ANAPC15P60006 121 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 FAXDC2Q96IV6 333 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 ADAMTS13Q76LX8 1427 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 NCKAP5LQ9HCH0 1330 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 U2SURPO15042 1029 aaKnown RBP11.2□□□□□ -0.62
CLIP1-214ENST00000540539 ZRANB2O95218 330 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-214ENST00000540539 CPP00450 1065 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 FOXD4L5Q5VV16 416 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-214ENST00000540539 FOXD4L4Q8WXT5 416 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-214ENST00000540539 UBXN6Q9BZV1 441 aa11.2□□□□□ -0.62
CLIP1-214ENST00000540539 ZSCAN16Q9H4T2 348 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-214ENST00000540539 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-214ENST00000540539 ASXL1Q8IXJ9 1541 aa11.19□□□□□ -0.62
CLIP1-214ENST00000540539 LIG1P18858 919 aa11.19□□□□□ -0.62
CLIP1-214ENST00000540539 ACTN2P35609 894 aa11.19□□□□□ -0.62
CLIP1-214ENST00000540539 RBM5P52756 815 aaKnown RBP eCLIP11.19□□□□□ -0.62
CLIP1-214ENST00000540539 CORO7P57737 925 aa11.19□□□□□ -0.62
CLIP1-214ENST00000540539 TPD52L1Q16890 204 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-214ENST00000540539 RNF20Q5VTR2 975 aa11.19□□□□□ -0.62
CLIP1-214ENST00000540539 NAIF1Q69YI7 327 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-214ENST00000540539 CT47B1P0C2W7 299 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-214ENST00000540539 OAS2P29728 719 aaKnown RBP11.18□□□□□ -0.62
CLIP1-214ENST00000540539 AK7Q96M32 723 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 RPS6KL1Q9Y6S9 549 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 MED14O60244 1454 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 SLU7O95391 586 aaKnown RBP11.18□□□□□ -0.62
CLIP1-214ENST00000540539 LMAN1P49257 510 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 ZNF428Q96B54 188 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 METP08581 1390 aa11.18□□□□□ -0.62
CLIP1-214ENST00000540539 NPHP4O75161 1426 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-214ENST00000540539 ANKRD33BA6NCL7 494 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 GADD45BO75293 160 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-214ENST00000540539 SMC2O95347 1197 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 ERCC6LQ2NKX8 1250 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 TTLL5Q6EMB2 1281 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 CCDC146Q8IYE0 955 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 NBPF3Q9H094 633 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 TBX22Q9Y458 520 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 IVLP07476 585 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 FOXR1Q6PIV2 292 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 MORC1Q86VD1 984 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 SLC24A3Q9HC58 644 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 PSD3Q9NYI0 1048 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 TRAK1Q9UPV9 953 aa11.17□□□□□ -0.62
CLIP1-214ENST00000540539 IPO8O15397 1037 aaKnown RBP11.16□□□□□ -0.62
CLIP1-214ENST00000540539 CCDC186Q7Z3E2 898 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 EXOC4Q96A65 974 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 PDRG1Q9NUG6 133 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 YTHDC2Q9H6S0 1430 aaKnown RBP11.16□□□□□ -0.62
CLIP1-214ENST00000540539 DIP2AQ14689 1571 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 ANKRD65E5RJM6 399 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 APAF1O14727 1248 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 TPM1P09493 284 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 TBC1D9Q6ZT07 1266 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 DNAAF4Q8WXU2 420 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 MIEF2Q96C03 454 aa11.16□□□□□ -0.62
CLIP1-214ENST00000540539 STRCQ7RTU9 1775 aa11.15□□□□□ -0.62
CLIP1-214ENST00000540539 C21orf2O43822 256 aa11.15□□□□□ -0.62
CLIP1-214ENST00000540539 SMARCA5O60264 1052 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-214ENST00000540539 RARSP54136 660 aaKnown RBP11.15□□□□□ -0.62
CLIP1-214ENST00000540539 BMP2KLQ5H9B9 411 aa11.15□□□□□ -0.62
CLIP1-214ENST00000540539 CCDC183Q5T5S1 534 aa11.15□□□□□ -0.62
CLIP1-214ENST00000540539 FAM210AQ96ND0 272 aa11.15□□□□□ -0.62
CLIP1-214ENST00000540539 CTAGE5O15320 804 aa11.15□□□□□ -0.63
CLIP1-214ENST00000540539 HMGB1P09429 215 aaKnown RBP11.15□□□□□ -0.63
CLIP1-214ENST00000540539 HDAC1Q13547 482 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-214ENST00000540539 CWC27Q6UX04 472 aaKnown RBP11.15□□□□□ -0.63
CLIP1-214ENST00000540539 USP26Q9BXU7 913 aa11.15□□□□□ -0.63
CLIP1-214ENST00000540539 VASPP50552 380 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 MNAT1P51948 309 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 ZSCAN25Q6NSZ9 544 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 ADAM21Q9UKJ8 722 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 ARHGEF28Q8N1W1 1705 aaKnown RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 CAND2O75155 1236 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 NEBLO76041 1014 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 IRX1P78414 480 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 MVPQ14764 893 aaKnown RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 TMCO3Q6UWJ1 677 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 LEKR1Q6ZMV7 388 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 NYAP1Q6ZVC0 841 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 PRPF38AQ8NAV1 312 aaKnown RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 LRRN4CLQ8ND94 238 aa11.14□□□□□ -0.63
CLIP1-214ENST00000540539 SRRTQ9BXP5 876 aaKnown RBP11.14□□□□□ -0.63
CLIP1-214ENST00000540539 GDPD2Q9HCC8 539 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms