RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RBM6P78332 1123 aaKnown RBP11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 NUCB1Q02818 461 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 CHRNA2Q15822 529 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 CTR9Q6PD62 1173 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 SHPRHQ149N8 1683 aa11.34□□□□□ -0.59
CTNNA1-243ENST00000540387 BRPF1P55201 1214 aaPredicted RBP11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 FOXD4L5Q5VV16 416 aaPredicted RBP11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 DZIP1LQ8IYY4 767 aaKnown RBP11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 NFATC2IPQ8NCF5 419 aa11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 FOXD4L4Q8WXT5 416 aaPredicted RBP11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 RUNDC1Q96C34 613 aa11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 SMC4Q9NTJ3 1288 aa11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.33□□□□□ -0.59
CTNNA1-243ENST00000540387 USP54Q70EL1 1684 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 KDM4AO75164 1064 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 FCHSD2O94868 740 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 GYS2P54840 703 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 SULT6B1Q6IMI4 303 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 KIF1BPQ96EK5 621 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 PLEKHF1Q96S99 279 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 EYA1Q99502 592 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 KIF24Q5T7B8 1368 aa11.33□□□□□ -0.6
CTNNA1-243ENST00000540387 TPM3P06753 285 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 NEUROD2Q15784 382 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 TCP11L2Q8N4U5 519 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 CCDC112Q8NEF3 446 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 ZNF446Q9NWS9 450 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 RRP7AQ9Y3A4 280 aaKnown RBP11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 NHSL1Q5SYE7 1610 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 KIAA0232Q92628 1395 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 PRKAR2BP31323 418 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 CT47A1Q5JQC4 288 aaPredicted RBP11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 BANK1Q8NDB2 785 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 HCLS1P14317 486 aaPredicted RBP11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 ZKSCAN2Q63HK3 967 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 C16orf45Q96MC5 204 aaPredicted RBP11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 FBXO3Q9UK99 471 aa11.32□□□□□ -0.6
CTNNA1-243ENST00000540387 CASQ1P31415 396 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 PLCB2Q00722 1185 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 MUM1L1Q5H9M0 696 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 SYT10Q6XYQ8 523 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 CHD1LQ86WJ1 897 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 C10orf67Q8IYJ2 551 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 PHACTR3Q96KR7 559 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 TRIM66O15016 1216 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 GUCY2CP25092 1073 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 FBXO38Q6PIJ6 1188 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 PRDM11Q9NQV5 511 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 RTL1A6NKG5 1358 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 IQSEC2Q5JU85 1478 aa11.31□□□□□ -0.6
CTNNA1-243ENST00000540387 AHDC1Q5TGY3 1603 aaPredicted RBP11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 TNNT1P13805 278 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 NBPF6Q5VWK0 638 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 SPC24Q8NBT2 197 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 ANKRD24Q8TF21 1146 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 NBPF4Q96M43 638 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 CARD10Q9BWT7 1032 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 PAXBP1Q9Y5B6 917 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 PATL2C9JE40 543 aaKnown RBP11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 MYO1CO00159 1063 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 AP5Z1O43299 807 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 USHBP1Q8N6Y0 703 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 BRMS1Q9HCU9 246 aa11.3□□□□□ -0.6
CTNNA1-243ENST00000540387 GOLGA6L6A8MZA4 724 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 NEK11Q8NG66 645 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 CPDO75976 1380 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 IGSF1Q8N6C5 1336 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 ITPRIPQ8IWB1 547 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 TOMM22Q9NS69 142 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 LCMT1Q9UIC8 334 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 DDX19BQ9UMR2 479 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 CEP83Q9Y592 693 aa11.29□□□□□ -0.6
CTNNA1-243ENST00000540387 FAM83GA6ND36 823 aa11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 GADD45BO75293 160 aaPredicted RBP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 HSP90B1P14625 803 aaKnown RBP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 TMPOP42166 694 aaKnown RBP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 TPRNQ4KMQ1 711 aa11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 GPATCH11Q8N954 259 aa11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 RTF1Q92541 710 aaKnown RBP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 V9GYY5 206 aaPredicted RBP11.28□□□□□ -0.6
CTNNA1-243ENST00000540387 LTN1O94822 1766 aa11.27□□□□□ -0.6
CTNNA1-243ENST00000540387 ERBB3P21860 1342 aa11.27□□□□□ -0.6
CTNNA1-243ENST00000540387 CCDC172P0C7W6 258 aa11.27□□□□□ -0.6
CTNNA1-243ENST00000540387 KRBA2Q6ZNG9 492 aa11.27□□□□□ -0.6
CTNNA1-243ENST00000540387 GTF3C6Q969F1 213 aa11.27□□□□□ -0.6
CTNNA1-243ENST00000540387 CDC45O75419 566 aa11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 PTGS1P23219 599 aa11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 SLFNL1Q499Z3 407 aa11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 TXLNBQ8N3L3 684 aa11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 ATG3Q9NT62 314 aa11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 ZNF215Q9UL58 517 aaPredicted RBP11.27□□□□□ -0.61
CTNNA1-243ENST00000540387 PHRF1Q9P1Y6 1649 aaKnown RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 NUTM2BA6NNL0 878 aaPredicted RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 NUTM2EB1AL46 878 aaPredicted RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 SMARCA5O60264 1052 aaPredicted RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 TRIM27P14373 513 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 BMS1Q14692 1282 aaKnown RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 NUTM2AQ8IVF1 878 aaPredicted RBP11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 IFT57Q9NWB7 429 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms